Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0036
         (443 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.0  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   8.0  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   8.0  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   8.0  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   8.0  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   8.0  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   8.0  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   8.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   8.0  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   8.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   8.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.0  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   8.0  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   8.0  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   8.0  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   8.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   8.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 120  MTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPP 224
            +T   +E   +G P S   D + QH       PPP
Sbjct: 967  VTIITAEEAPSGPPTSIRVDDLDQHTLKVTWKPPP 1001


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 134 PMGPWISIQEQVPRFRYIGPPTP 156


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 134 PMGPWISIQEQVPRFRYIGPPTP 156


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 134 PMGPWISIQEQVPRFRYIGPPTP 156


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 134 PMGPWISIQEQVPRFRYIGPPTP 156


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 134 PMGPWISIQEQVPRFRYIGPPTP 156


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 138 PMGPWISIQEQVPRFRYIGPPTP 160


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 134 PMGPWISIQEQVPRFRYIGPPTP 156


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 133 PMGPWISIQEQIPRFRYIGPPTP 155


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 133 PMGPWISIQEQIPRFRYIGPPTP 155


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 359 PMGPWISIQEQVPRFRYIGPPTP 381


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 379 PMGPWISIQEQIPRFRYIGPPTP 401


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 349 PMGPWISIQEQIPRFRYIGPPTP 371


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 360 PMGPWISIQEQIPRFRYIGPPTP 382


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 360 PMGPWISIQEQIPRFRYIGPPTP 382


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 349 PMGPWISIQEQIPRFRYIGPPTP 371


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 371 PMGPWISIQEQIPRFRYIGPPTP 393


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 339 PAGPAANIRARCPLAAYLRSPPP 271
           P GP  +I+ + P   Y+  P P
Sbjct: 381 PMGPWISIQEQIPRFRYIGPPTP 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,488
Number of Sequences: 438
Number of extensions: 1558
Number of successful extensions: 23
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)