Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0034
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 67 3e-12
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 56 4e-09
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 52 8e-08
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 51 1e-07
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 51 1e-07
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 43 4e-05
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 41 1e-04
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 29 0.84
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 27 1.9
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 27 3.4
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 26 4.5
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 66.9 bits (156), Expect = 3e-12
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
Frame = +1
Query: 4 PTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKLF 183
PT+L T K+ ++E F PI + ++ A++ N E L VF + + F
Sbjct: 358 PTLLVDATNEMKIAQEECFAPIALVFRAKSPEHALEIANGTEFGLGASVFGRDKQLCQYF 417
Query: 184 TEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTFTHKKSCLKKNFAAIG 363
T+ +G +++ND FY ++ +PFGG SG G + G + + + K+ F+AI
Sbjct: 418 TDNLETGMVAVNDFGAFYLLQ-MPFGGCKKSGYGRFAGYEGLRGICNSKAIAYDRFSAIH 476
Query: 364 EKLASG-RYP-PYTEGNLKFITALMKKRHGPSLKYLPH 471
+ YP P ++ +F+ LM +G + +P+
Sbjct: 477 TGIPPAVDYPIPDSQKAWQFVRGLMGTVYGAWISLVPN 514
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 56.4 bits (130), Expect = 4e-09
Identities = 34/111 (30%), Positives = 55/111 (49%)
Frame = +1
Query: 1 EPTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKL 180
EPTIL+ VT V ++EIFGP+L ++ + EAI+ N + L V +N
Sbjct: 384 EPTILSNVTEDMAVGKEEIFGPVLAVIKFKTIEEAIRRGNNSTYGLAAGVHTNNITNAIK 443
Query: 181 FTEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTFTHKKS 333
+ +G++ +N + + +PFGG SGIG G + +T K+
Sbjct: 444 VSNALEAGTVWVNCYNLLH--HQIPFGGYKESGIGRELGSYGLTNYTQTKA 492
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 52.0 bits (119), Expect = 8e-08
Identities = 30/106 (28%), Positives = 50/106 (47%)
Frame = +1
Query: 1 EPTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKL 180
EPT+L+ VT V +E FGP+ + ++ E I++ N+ + L YVF+N +
Sbjct: 379 EPTVLSGVTQDMLVASEETFGPLASVFKFDDTEEVIEWANDSDVGLAGYVFTNNLSTMIH 438
Query: 181 FTEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTF 318
++ G + N I + FGG+ SG G G+ + F
Sbjct: 439 VAKELEVGLVGAN--IEMVDEPFISFGGIKQSGFGKEAGRLGVQEF 482
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 51.2 bits (117), Expect = 1e-07
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Frame = +1
Query: 4 PTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKLF 183
PT+ V +K+ +EIFGP+L + EA++ N+ E+ L VFS + F
Sbjct: 387 PTVFTNVQTHNKIWREEIFGPVLAVKTFHTNEEALELANDSEYGLGSGVFSTNPKTLEFF 446
Query: 184 TEQTRSGSISINDTIMFYGVET--LPFGGVGNSGIG 285
+ +G S+N+ Y V T LP+ G +SG+G
Sbjct: 447 SNNIEAGMCSLNN----YHVVTHELPWIGWKHSGLG 478
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 51.2 bits (117), Expect = 1e-07
Identities = 32/110 (29%), Positives = 54/110 (49%)
Frame = +1
Query: 4 PTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKLF 183
PTI A + ++++EIFGP++ I + EAI+ N + L F+
Sbjct: 380 PTIFADCSENMTIVKEEIFGPVVAISKFKTEDEAIEKANNTTYGLAAMCFTKDLERAHRV 439
Query: 184 TEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTFTHKKS 333
+++ +G + IN T ++ PFGG+ SGIG G I+ +T K+
Sbjct: 440 SDELEAGMVFINST-ENSDIQA-PFGGIKMSGIGNELGSNGIEMYTQIKA 487
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 43.2 bits (97), Expect = 4e-05
Identities = 29/111 (26%), Positives = 47/111 (42%)
Frame = +1
Query: 1 EPTILAKVTPADKVMEDEIFGPILPIVCIENAYEAIKFINEREHPLVLYVFSNQYNIQKL 180
EPT++ + E+E FGP+ + + E + + N+ L Y+FS +
Sbjct: 384 EPTVIINAKQGMLISEEETFGPVGALFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFR 443
Query: 181 FTEQTRSGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTIDTFTHKKS 333
E + G + N ++ + PFGGV SG G K I + KS
Sbjct: 444 VGEALQVGMVGCNTGLVSDVLS--PFGGVKESGFGREGSKYGISEYLDIKS 492
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 41.1 bits (92), Expect = 1e-04
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Frame = +1
Query: 1 EPTILAKVTPADKVMEDEIFGPILPIVCIE-NAYEAIKFINEREHP--LVLYVFSNQYNI 171
EPT+L P + +E+FGP+L + E + +A+ + + P L +F+ +
Sbjct: 415 EPTVLLSKNPKHDIFVNELFGPVLSVYVYEDDNLDAVCDLIDTTTPYGLTGSIFAQDRVV 474
Query: 172 QKLFTEQTR--SGSISINDTIMFYGVETLPFGGVGNSGIGAYHGKKTI-DTFTHKKSCLK 342
+ T++ R +G+ IND V PFGG SG G I F +S +K
Sbjct: 475 VRKLTDRLRNAAGNFYINDKCTGAVVGEQPFGGARASGTNDKAGSGMILSRFVSPRS-IK 533
Query: 343 KNFA 354
FA
Sbjct: 534 DTFA 537
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 28.7 bits (61), Expect = 0.84
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +1
Query: 298 KKTIDTFTHKK---SCLKKNFAAIGEKLAS 378
KKT+DTF +K SCLK N I +K+ S
Sbjct: 1369 KKTLDTFLMEKLCSSCLKNNIEIIPDKINS 1398
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 3 AHNIGQGHAGRQSDGRRDIRSHLTNSLY 86
AH+I + G+ + + + SHLTN LY
Sbjct: 61 AHSISKPFDGQNDEEKPSLYSHLTNELY 88
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +1
Query: 382 RYPPYTEGNLKFITALMKKRHGPSLKYLPHFMAFALGAAISYGIFAWQKMASDDS*KHEA 561
R+ GN++ I + + S YL + F+ A +G+ W + SDD +E
Sbjct: 484 RFQSTVLGNMEDIQSQTEFFSKTSPLYLTMDVGFSTIEAFLHGVTRWNENTSDDPATYEI 543
Query: 562 MTRRATLSWHNQLFYI 609
+ + L W QL I
Sbjct: 544 ILQNLFL-WCKQLVEI 558
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 298 KKTIDTFTHKKSCLKKNFAAIGEKLASGRYPPYTEGNL 411
K TH+KS + + EK+++ + PY GN+
Sbjct: 54 KSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNV 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,381
Number of Sequences: 5004
Number of extensions: 60213
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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