Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0034
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   8.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   8.5  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 104 PSNL*MKGNIR*CFTCSAINTTYKSYSLNRL 196
           PSN+    N+   FT  A NT  + Y+LN +
Sbjct: 564 PSNIEESNNMTDSFTRIANNTIQELYTLNNM 594


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 393 LHRRKLEIHNGTNEETSRA 449
           +HR +  +HNG+N  + R+
Sbjct: 307 IHRGRGSVHNGSNNGSPRS 325


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 396 HRRKLEIHNGTNEETSRALAKVSATLHGLRSRS 494
           HR  L ++   +E  ++   K + + + LRSRS
Sbjct: 189 HRTVLAVNIEKSENETKTCKKYAISSNSLRSRS 221


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 396 HRRKLEIHNGTNEETSRALAKVSATLHGLRSRS 494
           HR  L ++   +E  ++   K + + + LRSRS
Sbjct: 189 HRTVLAVNIEKSENETKTCKKYAISSNSLRSRS 221


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 396 HRRKLEIHNGTNEETSRALAKVSATLHGLRSRS 494
           HR  L ++   +E  ++   K + + + LRSRS
Sbjct: 189 HRTVLAVNIEKSENETKTCKKYAISSNSLRSRS 221


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 396 HRRKLEIHNGTNEETSRALAKVSATLHGLRSRS 494
           HR  L ++   +E  ++   K + + + LRSRS
Sbjct: 189 HRTVLAVNIEKSENETKTCKKYAISSNSLRSRS 221


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 396 HRRKLEIHNGTNEETSRALAKVSATLHGLRSRS 494
           HR  L ++   +E  ++   K + + + LRSRS
Sbjct: 189 HRTVLAVNIEKSENETKTCKKYAISSNSLRSRS 221


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 396 HRRKLEIHNGTNEETSRALAKVSATLHGLRSRS 494
           HR  L ++   +E  ++   K + + + LRSRS
Sbjct: 189 HRTVLAVNIEKSENETKTCKKYAISSNSLRSRS 221


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 396 HRRKLEIHNGTNEETSRALAKVSATLHGLRSRS 494
           HR  L ++   +E  ++   K + + + LRSRS
Sbjct: 189 HRTVLAVNIEKSENETKTCKKYAISSNSLRSRS 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,504
Number of Sequences: 438
Number of extensions: 4346
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)