Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0033
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q64TZ7 Cluster: Putative uncharacterized protein; n=1; ...    34   2.8  
UniRef50_Q85JA0 Cluster: NADH dehydrogenase subunit 2; n=2; Clon...    34   2.8  
UniRef50_O15041 Cluster: Semaphorin-3E precursor; n=37; Euteleos...    34   3.7  
UniRef50_Q4RXA8 Cluster: Chromosome 11 SCAF14979, whole genome s...    33   8.4  
UniRef50_Q7RN70 Cluster: Prt_seq No definition line found; n=4; ...    33   8.4  

>UniRef50_Q64TZ7 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides fragilis|Rep: Putative uncharacterized
           protein - Bacteroides fragilis
          Length = 60

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = -3

Query: 607 KKKLHFIYL*FLKFFVCIFLMAKRCYL*AKMLRKGISIFLVIIFI 473
           KK +HF+ +   K+ V IFL++   Y   K    G+SIFL I+F+
Sbjct: 5   KKAMHFLSVLQKKYNVSIFLISDLLYQQYKKSNYGLSIFLSILFV 49


>UniRef50_Q85JA0 Cluster: NADH dehydrogenase subunit 2; n=2;
           Clonorchis sinensis|Rep: NADH dehydrogenase subunit 2 -
           Clonorchis sinensis
          Length = 288

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 248 LRVYVFICVDTAVWQACKPGILHRSLGIVCSERIIYFNLQKPWS-YEILYPFFIKGLVVC 424
           L +YVF+      W +    +L R  G  C    I+F L   WS ++ LYP+FI  L+VC
Sbjct: 189 LLLYVFMFYP--FWASMVVMLLSRLDGDECRSWDIFFFLSSCWSRFQGLYPYFISFLLVC 246


>UniRef50_O15041 Cluster: Semaphorin-3E precursor; n=37;
           Euteleostomi|Rep: Semaphorin-3E precursor - Homo sapiens
           (Human)
          Length = 775

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 422 KQPVPL*RMDIKSRKTKVFVN*NILFA--RYRRCRVNGEVCRVYTLARRPY 276
           K PVP+  M+I S++ ++++      A  R+  C + G  C    LAR PY
Sbjct: 486 KDPVPIISMEISSKRQQLYIGSASAVAQVRFHHCDMYGSACADCCLARDPY 536


>UniRef50_Q4RXA8 Cluster: Chromosome 11 SCAF14979, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 11 SCAF14979, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 772

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 422 KQPVPL*RMDIKSRKTKVFVN*--NILFARYRRCRVNGEVCRVYTLARRPY 276
           K P P+  M I S++ +++V     +      RC V GE C    LAR PY
Sbjct: 505 KVPTPITTMKISSKRQQLYVGSVLGVTHLALHRCDVYGEACADCCLARDPY 555


>UniRef50_Q7RN70 Cluster: Prt_seq No definition line found; n=4;
           Plasmodium (Vinckeia)|Rep: Prt_seq No definition line
           found - Plasmodium yoelii yoelii
          Length = 274

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 357 SIYKNLGLTRFYIHSS*RDWLFVAKSISFYKENIS-VEEAINIITKKIEI 503
           +IY+++G   F   +S +   ++ K + FYKE    V  +IN +TK++E+
Sbjct: 77  NIYQDIGCNTFCERTSKQAHNYLKKKLDFYKEKYKIVSNSINKLTKELEL 126


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,328,182
Number of Sequences: 1657284
Number of extensions: 11921780
Number of successful extensions: 25840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25792
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)