Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0033
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871     29   3.4  
01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24...    28   6.0  
12_02_1141 + 26415235-26415858                                         28   7.9  

>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
          Length = 212

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +3

Query: 444 YKENISVEEAINIITKKI-EIPFRSILA*R*HRFAIKKIQTKNLRNY 581
           Y+ ++SVEEA++++ K I EI  R ++A +   F IK +  +  R Y
Sbjct: 146 YRPDMSVEEAVDLVDKCIKEIRLRLVVAPQ--NFIIKIVDKEGAREY 190


>01_01_0032 -
           247971-248107,248369-248468,248861-248959,249617-249781,
           249860-249940,250316-250384,250695-250790,252232-252282,
           253361-253419,254255-254324,254325-254553,254674-255098,
           255361-255441
          Length = 553

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 566 FCLYFFNGKTMLSLGQNASERNFDFFSYYIYCLFYTN 456
           F +Y      ++SL QN+SE  +  F Y+ Y  F+TN
Sbjct: 372 FAVYNMETTDIVSLYQNSSEELYSLFEYF-YDHFHTN 407


>12_02_1141 + 26415235-26415858
          Length = 207

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 542 KTMLSLGQNASERNFDFFSYYIY 474
           KT +S G   + RNF FFSY I+
Sbjct: 185 KTRVSFGGGRNFRNFGFFSYEIF 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,061,352
Number of Sequences: 37544
Number of extensions: 305953
Number of successful extensions: 472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)