Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0033
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34135.2 68417.m04843 UDP-glucoronosyl/UDP-glucosyl transfera...    29   2.8  
At4g34135.1 68417.m04842 UDP-glucoronosyl/UDP-glucosyl transfera...    29   2.8  
At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1) (P...    29   3.7  
At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2) (...    28   4.9  
At4g34131.1 68417.m04841 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.6  

>At4g34135.2 68417.m04843 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 335

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 85  VP*IILHANGYVANCAGVCVR*H 153
           VP ++ H  GY + CAG C+  H
Sbjct: 148 VPRLVFHGTGYFSLCAGYCIGVH 170


>At4g34135.1 68417.m04842 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 483

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 85  VP*IILHANGYVANCAGVCVR*H 153
           VP ++ H  GY + CAG C+  H
Sbjct: 148 VPRLVFHGTGYFSLCAGYCIGVH 170


>At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1)
           (PRGB) identical to GB:CAA74026 from [Arabidopsis
           thaliana] ( FEBS Lett. (1997) 416 (3), 281-285);
           identical to cDNA proteasome subunit prgb GI:2511589
          Length = 204

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 444 YKENISVEEAINIITKKIEIPFRSILA*R*HRFAIKKIQTKNLRNY 581
           Y+ ++SVEEAI ++ K I +  RS L      F IK +     R+Y
Sbjct: 146 YRSDMSVEEAIELVDKCI-LEIRSRLVVAPPNFVIKIVDKDGARDY 190


>At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2)
           (PRCGA) identical to SP|O24633 Proteasome subunit beta
           type 2-2 (EC 3.4.25.1) (20S proteasome alpha subunit D2)
           {Arabidopsis thaliana}, cDNA proteasome subunit prcga
           GI:2511571
          Length = 199

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 444 YKENISVEEAINIITKKIEIPFRSILA*R*HRFAIKKIQTKNLRNY 581
           Y+ ++SVEEAI ++ K I +  RS L      F IK +     R Y
Sbjct: 146 YRSDMSVEEAIELVDKCI-LEIRSRLVIAPPNFVIKIVDKDGAREY 190


>At4g34131.1 68417.m04841 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 481

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 85  VP*IILHANGYVANCAGVCVR*H 153
           VP ++ H  GY + C+  C+R H
Sbjct: 147 VPRLVFHGTGYFSLCSEYCIRVH 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,650,943
Number of Sequences: 28952
Number of extensions: 272671
Number of successful extensions: 512
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)