Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0031
         (729 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8II50 Cluster: Putative uncharacterized protein; n=1; ...    36   1.0  
UniRef50_Q0UEA8 Cluster: Putative uncharacterized protein; n=1; ...    36   1.0  
UniRef50_Q22QQ9 Cluster: Putative uncharacterized protein; n=1; ...    35   1.8  
UniRef50_A0EIB9 Cluster: Chromosome undetermined scaffold_99, wh...    35   1.8  
UniRef50_Q7V0L4 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_Q0IBZ7 Cluster: Possible AraC-type regulatory protein, ...    34   4.1  

>UniRef50_Q8II50 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 1701

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = -2

Query: 578  NNISDNIVSSHVKYWFFFCFMVI*HNV*WLKNRCQKTLPIQYNTVHYVKT*HKMQIRFKI 399
            NNIS+N +S++  Y++F    +      W    C     IQ N  H++K   +  IR+  
Sbjct: 1308 NNISNNYISNNNNYYYFSKLHICLFKNVWKFLICH----IQVN--HFIKNILENDIRY-- 1359

Query: 398  DNSYNFTLSYIH*EYDLLNFNNIIQALNR-NSGNTVKK*NFKISF 267
             N++   +     +Y   N  NII  +N  NS N V   N K SF
Sbjct: 1360 -NTFEKLIDIYTHKYFYYNIKNIIYIINYINSSNIVYTNNKKYSF 1403


>UniRef50_Q0UEA8 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 154

 Score = 35.9 bits (79), Expect = 1.0
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 408 SYLHFVLSFHVMNSIVLDWECFLTSIFQPLDIVLYYHKTKKEPIFYMTAYNIIRY 572
           S+L  +L   V+N I + W C + ++  PL    YY   +    +Y+   N++ Y
Sbjct: 96  SFLSTILGGPVINKIGIKWSCLIAALAMPLHGSAYYVNARYRTEWYLLTANVLDY 150


>UniRef50_Q22QQ9 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1096

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = -2

Query: 485 NRCQKTLPIQYNTVHYVKT*HKMQIRFKIDNSYNFTLSYIH*EYDLLNFNNIIQALNRNS 306
           N  Q+   I ++ +   +  +K  I+FK+ N  N + +YI  +Y     NNI + +  N 
Sbjct: 412 NLKQEVSQITFDQLDLPQDDNKNYIKFKLQNERNESTTYIQ-QYQNSTINNISRLIEYND 470

Query: 305 GNTVKK*NFKISF 267
            N + K   K+SF
Sbjct: 471 FNELSKCQTKVSF 483


>UniRef50_A0EIB9 Cluster: Chromosome undetermined scaffold_99, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_99,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2150

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 132 KLNYYF-FNMIAVLNLFILPVVDV-FISLL*IYLYCKEYLSTMLKKLKRNLEILFFYSIS 305
           KLN+   FN I+ LN    PV+ + FISLL I +YC+  L  M+ K       +  + +S
Sbjct: 213 KLNHILRFNPISNLNQLFPPVLKLNFISLLIIGIYCERALDRMISKYNEAEYQILQFILS 272

Query: 306 TVP 314
            +P
Sbjct: 273 NLP 275


>UniRef50_Q7V0L4 Cluster: Putative uncharacterized protein; n=1;
           Prochlorococcus marinus subsp. pastoris str.
           CCMP1986|Rep: Putative uncharacterized protein -
           Prochlorococcus marinus subsp. pastoris (strain CCMP
           1378 / MED4)
          Length = 330

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
 Frame = +3

Query: 138 NYYFFNMIAVLNLFILPVVDVFISLL*IYLYCKEYLSTMLKKLKRNLEILFFYSIST--- 308
           N Y FN   V+ +F+L +  VF+S    Y+    Y S+++  +   L ILFF  +ST   
Sbjct: 159 NKYIFNSFLVI-IFLLYLFLVFLSTKIKYIKNINYFSSLITGIIIYLPILFFKDLSTATA 217

Query: 309 --VPI*CLNYIIKI*QIIFSM----YIR*SKIIAVVDFKSYLHFVLSFHVMNSI 452
             V +  + YI  I  I F      Y     ++   +FKS L F+L + ++ +I
Sbjct: 218 VGVGMHWIQYISIIGLIYFRKTSVNYKNIKDLLNSFEFKSRLLFILIYALVMTI 271


>UniRef50_Q0IBZ7 Cluster: Possible AraC-type regulatory protein,
           putative; n=1; Synechococcus sp. CC9311|Rep: Possible
           AraC-type regulatory protein, putative - Synechococcus
           sp. (strain CC9311)
          Length = 338

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 619 SLNIP*NLYFKFRQSFDWFKLNPVVDLYVRS 711
           SL +P NLY K  Q F W   NP+++L +RS
Sbjct: 165 SLKLPPNLYTKIVQQFAWHFKNPLINLELRS 195


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,113,336
Number of Sequences: 1657284
Number of extensions: 12878545
Number of successful extensions: 27746
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27729
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)