Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0031
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1...    29   0.90 
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   2.7  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   8.4  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   8.4  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    25   8.4  

>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = +3

Query: 381 KIIAVVDFKSYLHFVLSFHVMNSIVL--DWEC-FLTSIF-QPLDI 503
           K+  ++DFKSY+ FVL  +   S +L   + C F+ S+F +PL I
Sbjct: 55  KLSDLIDFKSYIEFVLKTNNSYSAILISYYRCIFIISLFHRPLTI 99


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 413 IRFKIDNSYNFTLSYIH*EYDLLNFNNIIQALNRNSGNT 297
           ++F +D S NF    I+ EY  + F N++  L + S N+
Sbjct: 435 VKFILD-SQNFFFESINTEYSFIIFTNLLMHLEKTSPNS 472


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 649 KFRQSFDWFKLNPVVDLYVRSN 714
           K R+  DW  L  V+D+ VRSN
Sbjct: 168 KHREQKDWNALKSVLDVCVRSN 189


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 111  RNLLTGVKLNYYFFNMIAVLNLF 179
            RNL  G+ + Y FFN+ AVL LF
Sbjct: 1489 RNL--GIFVGYVFFNIFAVLLLF 1509


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
          Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 76 EDKAGTIQCCLTCFQ 32
          +D+ G I  CLTCFQ
Sbjct: 32 QDEEGGIDLCLTCFQ 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,880
Number of Sequences: 5004
Number of extensions: 62727
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)