Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0031
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.9  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   3.9  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   3.9  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   3.9  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   3.9  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   3.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.0  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 513 YHKTKKEPIFYMTAYNIIRYIV 578
           Y  + ++P FYM   NI+ Y +
Sbjct: 411 YSTSMRDPAFYMLYQNILSYFL 432


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 537 LVLFL--FYGNITQCLVVEK*MSKNTP 463
           +V+F+  F GNI  C+V+ +  S  TP
Sbjct: 41  VVIFVTGFVGNIITCIVIWRNPSMQTP 67


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -2

Query: 200 HINNRKYKQVQH--CNHIEKI 144
           H NN  YK++Q+   N+IE+I
Sbjct: 91  HNNNNNYKKLQYYNINYIEQI 111


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -2

Query: 200 HINNRKYKQVQH--CNHIEKI 144
           H NN  YK++Q+   N+IE+I
Sbjct: 91  HNNNNNYKKLQYYNINYIEQI 111


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -2

Query: 200 HINNRKYKQVQH--CNHIEKI 144
           H NN  YK++Q+   N+IE+I
Sbjct: 91  HNNNNNYKKLQYYNINYIEQI 111


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -2

Query: 200 HINNRKYKQVQH--CNHIEKI 144
           H NN  YK++Q+   N+IE+I
Sbjct: 91  HNNNNNYKKLQYYNINYIEQI 111


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -2

Query: 200 HINNRKYKQVQH--CNHIEKI 144
           H NN  YK++Q+   N+IE+I
Sbjct: 324 HNNNNNYKKLQYYNINYIEQI 344


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -3

Query: 94  YFQCCLEDKAGTIQCCLTCFQVFSF--LKLLP 5
           Y+ CC      TI     C  VF+F  +K +P
Sbjct: 485 YYPCCWWKICWTITTPAICVGVFTFNIIKFVP 516


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -3

Query: 94  YFQCCLEDKAGTIQCCLTCFQVFSF--LKLLP 5
           Y+ CC      TI     C  VF+F  +K +P
Sbjct: 538 YYPCCWWKICWTITTPAICVGVFTFNIIKFVP 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,154
Number of Sequences: 438
Number of extensions: 4318
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)