Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0030
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...   101   5e-24
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.55 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score =  101 bits (242), Expect = 5e-24
 Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
 Frame = +3

Query: 54  TVAVAAPQSPT----EPIPILKQESSIEPDGSYQYSYETGNGISAAERGALKNIGAEEPA 221
           T  +AAPQ P+    +   I  Q+  +  DG+Y  ++ET NGIS  E G  K +  E P 
Sbjct: 10  TATLAAPQRPSGGADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPV 69

Query: 222 LQVEGQFQYPSEDGGTIQLSYIANENGFQPQGSHLPTPPPIPEVIQRALAYLATAPPQPE 401
           +  +G   Y + DG  + ++Y+A+ENGFQ QGSH+PT PPIP  IQRAL + A  P + +
Sbjct: 70  VS-QGSDSYTAPDGQQVSITYVADENGFQVQGSHIPTAPPIPPEIQRALEWNAAHPEEDD 128

Query: 402 NNRP 413
             +P
Sbjct: 129 GGQP 132


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 241 SSTQARTVVLSSCPTSPMRTASSLRDHIYP 330
           +S+ A T+VLS CP++ M     + D   P
Sbjct: 845 ASSTAATLVLSGCPSNMMELQVDIADSQQP 874


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 48  LVTVAVAAPQ--SPTEPIPILKQESSIEPDGSYQYS 149
           +VTVA++  +     E +P     +S+EPD    YS
Sbjct: 66  VVTVAISTGEWLLTEEKLPKTSSNASVEPDSKVTYS 101


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 288 ANENGFQPQGSHLPTPPPIPEVIQ 359
           AN N +QP    +P PP    V Q
Sbjct: 752 ANVNLWQPLSVSIPPPPSAQNVPQ 775


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,208
Number of Sequences: 438
Number of extensions: 3839
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)