Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0028
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    29   0.55 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   2.2  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   5.1  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = -3

Query: 186  HFGQHFE--RKYVKFNKSGRKIFSLMNLTHVTIV----YLTRANIYLKKSFLIRSVKCLS 25
            + G + E  R + K    G  +FS +    V  +    Y  R + +L KS++ R++ CL 
Sbjct: 1275 NLGNYMEALRLFEKVTSMGASVFSPIEFPFVLELIGEFYYGRGHKFLAKSYITRALSCLK 1334

Query: 24   RILC 13
             I C
Sbjct: 1335 NIGC 1338


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 419 QNLTRRSSRPPGMRCGSRGFRKLSHLPGPDPGHTRRP 309
           +N TR+S +P   +  SRG RK       DP     P
Sbjct: 153 RNATRKSKKPSASKDTSRGVRKSKAGAPSDPSSVHAP 189


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 447 FVDEQVRGHPELDAEV*PSSGYAVRIEGVPQVKPSS 340
           +  EQV  HP + A       Y VRI+GV  VKP S
Sbjct: 141 YAAEQVCHHPPISAYFYLCPEYKVRIDGV--VKPRS 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,417
Number of Sequences: 5004
Number of extensions: 45055
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)