Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0028
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0974 + 7541771-7542553,7542666-7542795,7543098-7543645,754...    31   0.55 
01_04_0141 + 16618916-16619265,16619400-16619418                       30   1.3  
04_04_1073 - 30606472-30606515,30606897-30606988,30607152-306072...    27   6.8  

>06_01_0974 +
           7541771-7542553,7542666-7542795,7543098-7543645,
           7544482-7544864,7546670-7546766
          Length = 646

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 21/81 (25%), Positives = 36/81 (44%)
 Frame = +2

Query: 227 RWTQMRLVKSALRRYARNWRSVPRQTISVCACAQDQAPEDGLTCGTPSIRTAYPEDG*TS 406
           R+ ++++V+ ++ R    W+ +P     VC+     +P+      T S  T    DG   
Sbjct: 258 RFDKVKIVRESMNRMIEAWKEIPDMDEEVCSSDVPPSPQS----QTRSSSTDSASDGRYP 313

Query: 407 ASSSGCPLTCSSTNRRGISST 469
           A S G   +  S  RR +S T
Sbjct: 314 ADSLGSN-SVQSVRRRNLSPT 333


>01_04_0141 + 16618916-16619265,16619400-16619418
          Length = 122

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 177 DQNVVSQST*FCDLGNQGGPKCDWSRVP*EGMREIGDRCRGRLFRSARVPRIR 335
           D+ V+   T  C+    GG +CD  R+         D+C GR   S+R+ R R
Sbjct: 34  DEIVIGGGTDRCNGWRDGGDRCDGQRLGGGDCDSGADQCDGRRGTSSRMARQR 86


>04_04_1073 -
           30606472-30606515,30606897-30606988,30607152-30607243,
           30607362-30607469,30607614-30607748,30607826-30607871,
           30608320-30608420,30608512-30608649,30608721-30608819,
           30608920-30609036,30609941-30610102,30610271-30610330,
           30611120-30611216,30611238-30611296,30611364-30611480,
           30611922-30612020,30612115-30612180,30612405-30612542,
           30612659-30612742,30612820-30612892,30612937-30612992,
           30613074-30613182,30613253-30613335,30613406-30613489,
           30613679-30613750,30613827-30613904,30613984-30614067,
           30614142-30614212,30614497-30614566,30614866-30614955,
           30615046-30615177,30615250-30615350,30615634-30615691,
           30615762-30615878,30617981-30618133
          Length = 1094

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 316 RVCPGSGPGRWLNLRNPLDPHRIPG-GRLDLRVKFWVPPHLLINEPTRHQFYLHAK 480
           R   G G G W ++ +  DP  IP  G     +K W    L++N   R ++ L  K
Sbjct: 15  RSSSGGGGGSWGSIGSAADPFDIPAKGAPVESLKKWRQAALVLNASRRFRYTLDLK 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,592,905
Number of Sequences: 37544
Number of extensions: 330757
Number of successful extensions: 919
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)