Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0028
(518 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 73 1e-13
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 2e-09
SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26) 41 5e-04
SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.061
SB_55684| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16) 29 3.0
SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083) 29 3.0
SB_12391| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_23153| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_7638| Best HMM Match : TFIID_30kDa (HMM E-Value=3) 29 3.0
SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22) 28 4.0
SB_2610| Best HMM Match : F5_F8_type_C (HMM E-Value=4.5e-29) 28 4.0
SB_15581| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-11) 28 4.0
SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_5621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_36468| Best HMM Match : DUF1643 (HMM E-Value=4.1) 27 7.0
SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24) 27 7.0
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 73.3 bits (172), Expect = 1e-13
Identities = 45/92 (48%), Positives = 57/92 (61%), Gaps = 6/92 (6%)
Frame = +1
Query: 244 IGQECLEKVCEKLEIGAEADYFGLRVCPGSGPGRWLNLRNP----LDPHRIPGG--RLDL 405
+GQE L+KVC++L+I E +YFGL+ C WLNLRNP L PH +PG RL L
Sbjct: 22 LGQEVLDKVCDELKI-KEKNYFGLKYCVND-TNVWLNLRNPVLTQLRPH-LPGKPYRLRL 78
Query: 406 RVKFWVPPHLLINEPTRHQFYLHAKLDLTEGR 501
VKF+V P L E TR QFY K ++EG+
Sbjct: 79 EVKFFVAPKELQQEETRWQFYFCLKNQISEGK 110
>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 58.8 bits (136), Expect = 2e-09
Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = +1
Query: 265 KVCEKLEIGAEADYFGLRVCPGSGPGRWLNLRNPLDPHRIP---GGRLDLRVKFWVPPHL 435
+VC K ++ AE DYFGLR +G RW+NLRN L P G L+LRVK++V
Sbjct: 439 QVCRKHDLSAEVDYFGLRYVQ-AGDARWINLRNSLREQLSPGVLGSALELRVKYFVNYSQ 497
Query: 436 LINEPTRH 459
L+ E TRH
Sbjct: 498 LLLEETRH 505
>SB_5728| Best HMM Match : Band_41 (HMM E-Value=1e-26)
Length = 906
Score = 41.1 bits (92), Expect = 5e-04
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Frame = +1
Query: 220 EIKVDPNAIGQECLEKVCEKLEIGAEADYFGLRVCPGSGPGRWLNLRNPLDPHRIPGGR- 396
++ + + G +CLE + EKL + E YFGL+ G WL+L P+ GR
Sbjct: 597 DLILSDGSTGSDCLEIIAEKLGL-TETAYFGLQY-RKKGDDWWLDLAKPVAKQLSNHGRI 654
Query: 397 -----LDLRVKFWV-PPHLLINEPTRHQFYLHAKLDLTEGRLV 507
L RVK++V + L E R+ +YL K ++ G L+
Sbjct: 655 AAVVTLKFRVKYFVCNAYSLQEEIARYLYYLQLKKNVLAGLLL 697
>SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 38.3 bits (85), Expect = 0.004
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = +1
Query: 220 EIKVDPNAIGQECLEKVCEKLEIGAEADYFGLR-VCPGSGPGRWLNLRNPLDPHRIPGG- 393
E +D G ++VC+ + + AE +YFGLR + G WL +
Sbjct: 21 ECPIDKTTKGDHLFDQVCDHIGL-AEKEYFGLRYIDEKDGQFNWLEGDRSIKRQMGKAPL 79
Query: 394 RLDLRVKFWVP-PHLLINEPTRHQFYLHAKLDLTEGRL 504
VKF+ P L + TR+QF L + DL +GR+
Sbjct: 80 HFYFAVKFYPENPTTLREDITRYQFVLQLREDLLKGRI 117
>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 34.3 bits (75), Expect = 0.061
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 238 NAIGQECLEKVCEKLEIGAEADYFGLRVCPGSGPGRWLNL 357
+A GQ + VC+ L++ E DYFGLR S WL+L
Sbjct: 2 DAKGQTVFDTVCKALDL-VEKDYFGLRYVDDSKQRHWLDL 40
>SB_55684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +1
Query: 241 AIGQECLEKVCEKLEIGAEADYFGLRVCPGSGPGRWLNLRNPLDPHRIPGGRL 399
++G + KVCE L+IG E FGL C GS G+ PL G R+
Sbjct: 16 SLGTQRSFKVCELLKIGEETSAFGLLFCQGS-MGKLTGKLTPLRVWNACGNRV 67
>SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)
Length = 573
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 406 RVKFWVPPHLLINEP-TRHQFYLHAKLDLTEGRLVV 510
RVK++V L+ + TRH +YL + D+ EG + V
Sbjct: 298 RVKYYVENICLLQQQSTRHLYYLQLRKDVLEGGIFV 333
>SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)
Length = 1466
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 196 SQPNSVILEIKVDPNAIGQECLEKVCEKLEIGAEADYFGLRVCPGSGPG 342
+QP SV E P+ +E + +C+ L+IG + D P S PG
Sbjct: 1101 AQPQSVESEHPETPSDAAKESSQALCDLLQIGRKQDSKEAAKPPDSTPG 1149
>SB_12391| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 184 MWLVSQPNSVILEIKVDPNAIGQECLEKVCEKLEIGAEADYFGLRVCPGS 333
+W+V +P S + + V P ++G KV E+ + DY+ +R PG+
Sbjct: 450 IWVVHRPRSGMWSLMV-PFSVGSHSF-KVTASSELNIDFDYYFIRRLPGN 497
>SB_23153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 226 KVDPNAIGQECLEKVCEKLEIGAE 297
K DP IG E +EK+C+ L++ E
Sbjct: 20 KDDPETIGPEGIEKLCQDLDVDPE 43
>SB_7638| Best HMM Match : TFIID_30kDa (HMM E-Value=3)
Length = 314
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 217 LEIKVDPNAIGQECLEKVCEKLEIGAEADYFGLRVCPGSGPGRWLNLRNPLD 372
L +K DP C E+ C++L I D+ R GRW ++ P D
Sbjct: 81 LYVKFDPRC----CTEEGCDELVIATSPDFQQNRYVLDGPQGRWFDIELPGD 128
>SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22)
Length = 442
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +1
Query: 361 NPLDPHRIPGGRLDLRVKFW-VPPHLL---INEP 450
NP D H I G D RV W +P H L I+EP
Sbjct: 24 NPFDDHMIATGSEDARVMIWQIPEHGLHSNISEP 57
>SB_2610| Best HMM Match : F5_F8_type_C (HMM E-Value=4.5e-29)
Length = 334
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -3
Query: 237 WVHLDFQDHRIRLTD*PHFGQHFERKYVKFNKSGRKI-FSLMNLTHVTIV 91
W+ H RL + P GQH K+NK G + L +T +T V
Sbjct: 171 WIEPGHNPHHARLNNQPVGGQHIGAWAAKYNKKGEYLEVDLGQVTWITHV 220
>SB_15581| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-11)
Length = 133
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -3
Query: 237 WVHLDFQDHRIRLTD*PHFGQHFERKYVKFNKSGRKI-FSLMNLTHVTIV 91
W+ H RL + P GQH K+NK G + L +T +T V
Sbjct: 17 WIEPGHNPHHARLNNQPVGGQHIGAWAAKYNKKGEYLEVDLGQVTWITHV 66
>SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +1
Query: 361 NPLDPHRIPGGRLDLRVKFW-VPPHLL---INEP 450
NP D H I G D RV W +P H L I+EP
Sbjct: 88 NPFDDHMIATGSEDARVMIWQIPEHGLHSNISEP 121
>SB_5621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 242 AFGSTLISKITELG*LTNHILVNISNENT*NLI 144
A GS L S LG + NH+ + + ++ T NL+
Sbjct: 4 AIGSQLFSPFRALGYIANHVPLAVQSQGTENLV 36
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 436 LINEPTRHQFYLHAKLDLTEGRL 504
+ N T+HQFYL + DL + RL
Sbjct: 417 ITNHKTKHQFYLQLRKDLLDCRL 439
>SB_36468| Best HMM Match : DUF1643 (HMM E-Value=4.1)
Length = 471
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +2
Query: 221 KSRWTQMRLVKSALRRYARNWRSVPRQTIS-VCACAQDQAP 340
KSRW L + + R WR P TI+ + + Q P
Sbjct: 210 KSRWEDEELDRPGCFAWMREWRDAPTHTIAGIVEMYEQQVP 250
>SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)
Length = 364
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +2
Query: 245 LVKSALRRYARNWRSVPRQTISVCACAQ---DQAPEDGLTCGTPSIRTAYPEDG 397
LV +L +ARNW S T+++C A D + +R Y E G
Sbjct: 41 LVSGSLSTFARNWESSNPLTLTLCLFASFLADFVQPSSIKVYLSGVRAMYIEQG 94
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 239 MRLVKSALRRYARNWRSVPRQTISVCACAQDQAPEDGLTCGTPSIRTAYPEDG*TSA 409
+++ S L+ +A RSV RQ + + A EDG T T + E+G T A
Sbjct: 1567 LQVFHSLLKAHAVEARSVVRQALEILTPAMPARMEDGNTMLTHWTKKIIVEEGHTVA 1623
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,647,942
Number of Sequences: 59808
Number of extensions: 370273
Number of successful extensions: 861
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -