Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0028
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.20 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.47 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 322  TRADRNSLPRHRSPISRIPSQGTLDQSH 239
            +R+   S+PR     SR+PSQG    +H
Sbjct: 1773 SRSGSQSMPRQNGRYSRVPSQGGGSGTH 1800



 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 451 TRHQFYLHAKLDLTEGRLVVAD 516
           T+H+     +L  T+GRLV+ +
Sbjct: 183 TKHRLTGETRLSATKGRLVITE 204


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 213 DLGNQGGPKCDWSRV 257
           DLG +GG +  WSRV
Sbjct: 379 DLGKEGGLEAQWSRV 393


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 289  RSPISRIPSQGTLDQSHLGP 230
            R+P+ R+    + D+S+ GP
Sbjct: 1338 RTPVPRLAQDSSEDESYRGP 1357


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 8   LPQRIRDKHFTERI 49
           +P  +++KH T+RI
Sbjct: 117 VPHELKEKHLTQRI 130


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -3

Query: 249 TNRIWVHLDFQDHRIR 202
           T  +W+  ++QDH+ +
Sbjct: 68  TTNVWLEHEWQDHKFQ 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,611
Number of Sequences: 438
Number of extensions: 3203
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)