Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0027
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 127 2e-30
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 111 7e-26
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 56 5e-09
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.12
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 7.9
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 7.9
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 127 bits (306), Expect = 2e-30
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +1
Query: 10 VVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLF 189
VV+VLI+G L++ + LY GFI LGAGL+VG +GLAAGFAIGIVGDAGVRGTAQQPRLF
Sbjct: 70 VVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQPRLF 127
Query: 190 VGMILILIFAEVLGLYGLIVAIYL 261
V MILILIFAEVLGLYGLIVA+ L
Sbjct: 128 VAMILILIFAEVLGLYGLIVALLL 151
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 111 bits (268), Expect = 7e-26
Identities = 53/84 (63%), Positives = 67/84 (79%)
Frame = +1
Query: 10 VVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLF 189
V++VLIAG + +Y L+ GFIHL AGLAVG +G+AAG+AIG+VGD GV+ +Q R+F
Sbjct: 70 VMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQDRIF 129
Query: 190 VGMILILIFAEVLGLYGLIVAIYL 261
V M+LILIFAEVLGLYGLIV + L
Sbjct: 130 VSMVLILIFAEVLGLYGLIVGLIL 153
Score = 35.9 bits (79), Expect = 0.006
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 58 PLYKGFIHL-GAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGL 234
P+Y F G ++ FS L AG+ + G A +P + + ++ ++ + ++G+
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 235 YGLIVAIYL 261
YGL++++ +
Sbjct: 67 YGLVMSVLI 75
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 56.0 bits (129), Expect = 5e-09
Identities = 26/66 (39%), Positives = 36/66 (54%)
Frame = +1
Query: 64 YKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGL 243
Y GF G+ VG L G +GI G + AQ LFV ++++ IF VLGL+GL
Sbjct: 126 YTGFALFWGGITVGLCNLICGVCVGITGSSAALADAQDASLFVKVLVVEIFGSVLGLFGL 185
Query: 244 IVAIYL 261
IV + +
Sbjct: 186 IVGLLI 191
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 82 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAI 255
LG V F + A + I I G + + G + PR+ ++ +IF EV+ +Y LI+AI
Sbjct: 48 LGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIAI 105
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.12
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -3
Query: 239 P*RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNP 69
P RP ++A ++ PT +VP P++P MP P+A P A AP NP
Sbjct: 1691 PVRPQSAAPPQMSA-PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 281
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 267 CVQVDGDD-KSV--KTQYFSENKNKNHSDE*PRLLSSTT 160
C++VD +D K + K+QY +EN N N + P L S+TT
Sbjct: 233 CIEVDSEDWKDLVWKSQYATENANTNSINNSP-LSSNTT 270
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -3
Query: 170 AVPRTPAS--PTMPMAKPAARPENPTAKPAP 84
A P P S P++PM PAA P P+A AP
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = -3
Query: 170 AVPRTPASPTMPMA----KPAARPENPTAKPAPK 81
+VP+ PA+P +P A +P A P P AP+
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQ 546
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 687 IKLICR*KSQKKCSLLSPKIKHMCNKLIKYW 595
IKLI + S++ +L I +C+ LI YW
Sbjct: 249 IKLILKVLSERIDALSDAVIYELCDSLIPYW 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,530
Number of Sequences: 5004
Number of extensions: 66684
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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