Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0027
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   6e-31
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.67 
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)          31   1.2  
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)                 30   1.5  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)                29   2.7  
SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       29   2.7  
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)           29   2.7  
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)                   29   3.6  
SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05)                   29   4.7  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)                     29   4.7  
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)                   28   6.2  
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)                    28   6.2  
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)                    28   6.2  
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)                     28   6.2  
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score =  131 bits (316), Expect = 6e-31
 Identities = 67/84 (79%), Positives = 74/84 (88%)
 Frame = +1

Query: 10  VVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLF 189
           VVAVLI  ++ +  +Y LYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVRGTAQQPRLF
Sbjct: 70  VVAVLIGSSISK--DYTLYKSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLF 127

Query: 190 VGMILILIFAEVLGLYGLIVAIYL 261
           VGMILILIFAEVLGLYGLIVA+ L
Sbjct: 128 VGMILILIFAEVLGLYGLIVALIL 151


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 298  REWCVF---RAFILCTGRWRR*VRKDPILQRK*E*ESFRRIT*AAEQYHARLHLP 143
            R WCV+   R+ I CT RW R V   P  + +   +S RR+    E   + L+ P
Sbjct: 931  RGWCVYHMGRSLIACTRRWMRKVACSPSKETRPHRQSSRRLASQQESQQSLLNAP 985


>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 85  GAGLAVGFSGLAAGFAIGIVG 147
           GAG+ VGF  LA G  +G+VG
Sbjct: 46  GAGMTVGFCNLACGICVGLVG 66


>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
          Length = 295

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 206 IRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAP 84
           ++I+P N +     PR P + T P   P   P  PT  P P
Sbjct: 205 VKILPGNGVVPTQAPRPPTTQTPPTKAPTDPPVPPTNPPVP 245


>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
          Length = 1155

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 158  TPASPTMPMAKPAARPENPTAKPAPKWMNPL 66
            TPA PT+PMA   A  + P+  PA     PL
Sbjct: 1095 TPALPTIPMAPSGAPAKTPSVAPAAPSPRPL 1125


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 151  HLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPG-GHQQSGQ 17
            ++   +++  Q +Q +L  NQ PS  T+  GGS    G GH   GQ
Sbjct: 2347 YVSHTVFKREQDEQLLLWLNQRPSDWTMTWGGSGTIYGWGHNHRGQ 2392


>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
          Length = 156

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 155 PASPTMPMAKPAARPENPTAKPAPK 81
           PA+P  P A PAA P  PTA PA +
Sbjct: 52  PAAPVTPTAAPAA-PVTPTAAPAAR 75



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3

Query: 155 PASPTMPMAKPAARPENPTAKPA 87
           PA+P  P A PAAR   PTA PA
Sbjct: 62  PAAPVTPTAAPAAR-VTPTAAPA 83


>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -3

Query: 233 RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNPL 66
           +P T+ K R    PT +L      +   +PT   AKP      PT +P  K   PL
Sbjct: 135 KPKTTVKRRPTERPTKSLLPEEEEKERQTPTPTKAKPTTIKRRPTERPTKKPTKPL 190


>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
          Length = 404

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 155 PASPTMPMAKPAARPENPTAKPAPK 81
           PA+P  P A PAA P  PTA PA +
Sbjct: 209 PAAPVTPTAAPAA-PVTPTAAPAAR 232



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3

Query: 155 PASPTMPMAKPAARPENPTAKPA 87
           PA+P  P A PAAR   PTA PA
Sbjct: 219 PAAPVTPTAAPAAR-VTPTAAPA 240


>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
          Length = 233

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 194 PTNNLGC*AVPRTPASP--TMPMAKPAARPENPTAKPAP 84
           P+NN G  A P TPA+P   M +A P+      T  P P
Sbjct: 87  PSNNFGTPATPATPATPAHNMGVAGPSGMATPGTFIPPP 125


>SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 330 IMSIEARSTGDGSGVCSGRLFCVQVDGDDKSVKTQYFSENKNKN 199
           + ++  +STGD S VC G +F    D   K +  Q   E K  N
Sbjct: 15  LSALNKKSTGDKSWVCFGNMFMKLPDSKTKDMIIQGLQEVKGFN 58


>SB_44502| Best HMM Match : UDPGT (HMM E-Value=2e-05)
          Length = 261

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 534 YKKFLVKIYRFTSPDAEQPQQQGCTGLEICENEQGTNVIYKSGRVL 397
           YK+  +++ R      + PQQ+G   +E      GT  +  SGR L
Sbjct: 170 YKENALRVSRLMEDKPQTPQQEGAFWIEYVIRNNGTQHLRPSGRDL 215


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -3

Query: 167  VPRTPAS-PTMPMAKPAARPENPTAKPAPKWMNP 69
            +P TP   P  P   P  RP  PT +P P    P
Sbjct: 1354 IPSTPRPRPPTPPRPPTPRPRPPTPRPGPPTPRP 1387


>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
          Length = 439

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 166 YHARLHLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPGGHQQSGQ 17
           YHA+  + +C    ++P   +L   Q  S    C       PGGHQ   Q
Sbjct: 264 YHAKNQVVKCYQPGKEPGGHLLPTYQAKSQAVKCYYIPGKEPGGHQAKNQ 313


>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 346

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 158 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 66
           TPA PT+P A   A  + P+  PA     PL
Sbjct: 286 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 316


>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
          Length = 347

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 158 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 66
           TPA PT+P A   A  + P+  PA     PL
Sbjct: 290 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 320


>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 1026

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 158  TPASPTMPMAKPAARPENPTAKPAPKWMNPL 66
            TPA PT+P A   A  + P+  PA     PL
Sbjct: 966  TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 996


>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
          Length = 355

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 191 TNNLGC*AVPRTPASPTMPMAKPA--ARPENPTAKPAPKWMNP 69
           +NN G  A P TPA+  +P+A P+  A P   T  PAP +  P
Sbjct: 220 SNNFGTPATPATPAN-GVPIAGPSGMATPGAFTPPPAPVFTPP 261


>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
 Frame = -3

Query: 302 ATGVVCVQGVYFVYR*MATISP*RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTM--PMA 129
           AT V      +  Y    + SP  P  S        P       A P  PA+P    P  
Sbjct: 29  ATTVTTTTANFTYYPHFISSSPPPPPPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPP 88

Query: 128 KPAARPENPTAKPAPK 81
            P   P  P A+PAP+
Sbjct: 89  PPLPAPPPPPAQPAPQ 104


>SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 446 HISRPVQPCCCGC 484
           H+  PV PCCC C
Sbjct: 77  HVELPVSPCCCLC 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,994,159
Number of Sequences: 59808
Number of extensions: 554704
Number of successful extensions: 1797
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1792
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)