Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0026
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 1.8
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 26 2.4
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 4.2
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 25 4.2
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 25 4.2
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 5.5
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 5.5
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 5.5
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 7.3
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 24 9.6
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 301 NGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQD 414
NG V D T VV S ED+ N ++ N P+ +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASE 316
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 2.4
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = -2
Query: 385 YSQSPSCFHLLTHHQN*QQMCHPLPKIHCPISL 287
Y P C TH N +P IH P+ L
Sbjct: 127 YDPRPGCLKFTTHEINVSYTDTSIPVIHIPVQL 159
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 150 LNTQFCKHYVTLSCKSSTHFFNKRELLLK 236
L + K +T CK +T +FN R +K
Sbjct: 106 LKSHRIKDKITTKCKGTTKYFNSRHFEIK 134
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 4.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 286 LVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSK 387
L NG+ V +D F +DV E+E + D+ K
Sbjct: 118 LAEQPNGYFVLNDIFRFLREDVEEEEESPDAVEK 151
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 334 VNSDDVLEDENNSDSGSKSNAPLREQDRFL 423
V S +L+ E+NS++ + + P +QDR L
Sbjct: 31 VISSKILQFEDNSETSLRHDLPKYDQDRLL 60
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.0 bits (52), Expect = 5.5
Identities = 12/58 (20%), Positives = 28/58 (48%)
Frame = +3
Query: 87 INSFLDYLNAMIQRR*LLLSSLNTQFCKHYVTLSCKSSTHFFNKRELLLKVDTKISNH 260
+NS++D L Q+R L LN Q+ + + + ++ F ++++ S++
Sbjct: 274 LNSYVDKLEVYCQKRKSLFEELNKQYQEQSIIRADPNNEKFQRLANFSKSIESEFSSY 331
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 5.5
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = +2
Query: 26 SSIYSMCE*IYKCQCSFRRTHQFFP 100
S +Y + + +C+ +R++H F+P
Sbjct: 1280 SMMYKEYQRVLECEYEYRKSHDFYP 1304
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 5.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 298 DNGFLVADDTFVVNSDDVLEDENNS 372
D L ++D V NSDD++ED +N+
Sbjct: 355 DGEDLESEDEEVDNSDDIVEDGDNA 379
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.6 bits (51), Expect = 7.3
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = +1
Query: 319 DDTFVVNSDDVLEDENNSD 375
DD+F+V++D+ ++D + SD
Sbjct: 1467 DDSFIVDNDEDVDDYDESD 1485
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 24.2 bits (50), Expect = 9.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 316 ADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPI 429
+D + V+S + D N+ S S++ + D LPI
Sbjct: 221 SDSLYSVSSMSIKNDSNSDSLSSSSSSDVSGSDENLPI 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,897
Number of Sequences: 5004
Number of extensions: 33484
Number of successful extensions: 94
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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