Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0026
         (455 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06145-1|AAA59930.1|  207|Homo sapiens CCAAT-box DNA binding pro...    42   0.001
BC005317-1|AAH05317.1|  207|Homo sapiens nuclear transcription f...    42   0.001
BC005316-1|AAH05316.1|  207|Homo sapiens nuclear transcription f...    42   0.001
X59710-1|CAA42230.1|  205|Homo sapiens CAAT-box DNA binding prot...    41   0.002
BC007035-1|AAH07035.1|  207|Homo sapiens nuclear transcription f...    41   0.002
D86967-1|BAA13203.2|  666|Homo sapiens KIAA0212 protein.               32   0.81 
BC019088-1|AAH19088.1|  657|Homo sapiens ER degradation enhancer...    32   0.81 

>L06145-1|AAA59930.1|  207|Homo sapiens CCAAT-box DNA binding
           protein subunit NF-YB. protein.
          Length = 207

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +1

Query: 253 LIMDSDELGNDLVRLD-NGFLVADDTFVVNSDDVLEDE-NNSDSGSKSNAPLREQDRFLP 426
           + MD D    D  +L  +   +    +V+   D  ED  N+ +  + S    REQD +LP
Sbjct: 1   MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLP 60

Query: 427 IANIAKIMK 453
           IAN+A+IMK
Sbjct: 61  IANVARIMK 69


>BC005317-1|AAH05317.1|  207|Homo sapiens nuclear transcription
           factor Y, beta protein.
          Length = 207

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +1

Query: 253 LIMDSDELGNDLVRLD-NGFLVADDTFVVNSDDVLEDE-NNSDSGSKSNAPLREQDRFLP 426
           + MD D    D  +L  +   +    +V+   D  ED  N+ +  + S    REQD +LP
Sbjct: 1   MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLP 60

Query: 427 IANIAKIMK 453
           IAN+A+IMK
Sbjct: 61  IANVARIMK 69


>BC005316-1|AAH05316.1|  207|Homo sapiens nuclear transcription
           factor Y, beta protein.
          Length = 207

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +1

Query: 253 LIMDSDELGNDLVRLD-NGFLVADDTFVVNSDDVLEDE-NNSDSGSKSNAPLREQDRFLP 426
           + MD D    D  +L  +   +    +V+   D  ED  N+ +  + S    REQD +LP
Sbjct: 1   MTMDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLP 60

Query: 427 IANIAKIMK 453
           IAN+A+IMK
Sbjct: 61  IANVARIMK 69


>X59710-1|CAA42230.1|  205|Homo sapiens CAAT-box DNA binding protein
           subunit B  (NF-YB) protein.
          Length = 205

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +1

Query: 259 MDSDELGNDLVRLD-NGFLVADDTFVVNSDDVLEDE-NNSDSGSKSNAPLREQDRFLPIA 432
           MD D    D  +L  +   +    +V+   D  ED  N+ +  + S    REQD +LPIA
Sbjct: 1   MDGDSSTTDASQLGISADYIGGSHYVIQPHDDTEDSMNDHEDTNGSKESFREQDIYLPIA 60

Query: 433 NIAKIMK 453
           N+A+IMK
Sbjct: 61  NVARIMK 67


>BC007035-1|AAH07035.1|  207|Homo sapiens nuclear transcription
           factor Y, beta protein.
          Length = 207

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +1

Query: 253 LIMDSDELGNDLVRLD-NGFLVADDTFVVNSDDVLEDE-NNSDSGSKSNAPLREQDRFLP 426
           + MD D    D  +L  +   +    +V+   D  ED  N+ +  + S    REQD +LP
Sbjct: 1   MTMDGDSSTTDASQLGISADYIGGSHYVMQPHDDTEDSMNDHEDTNGSKESFREQDIYLP 60

Query: 427 IANIAKIMK 453
           IAN+A+IMK
Sbjct: 61  IANVARIMK 69


>D86967-1|BAA13203.2|  666|Homo sapiens KIAA0212 protein.
          Length = 666

 Score = 32.3 bits (70), Expect = 0.81
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 54  YINVNVVSGEHINSFLDYLNAMIQRR*LLLSSLNTQFCKH 173
           Y+NVN+ SG+ +N+++D L A      +L+  +    C H
Sbjct: 429 YVNVNMFSGQLMNTWIDSLQAFFPGLQVLIGDVEDAICLH 468


>BC019088-1|AAH19088.1|  657|Homo sapiens ER degradation enhancer,
           mannosidase alpha-like 1 protein.
          Length = 657

 Score = 32.3 bits (70), Expect = 0.81
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 54  YINVNVVSGEHINSFLDYLNAMIQRR*LLLSSLNTQFCKH 173
           Y+NVN+ SG+ +N+++D L A      +L+  +    C H
Sbjct: 420 YVNVNMFSGQLMNTWIDSLQAFFPGLQVLIGDVEDAICLH 459


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,049,236
Number of Sequences: 237096
Number of extensions: 1025285
Number of successful extensions: 1613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)