Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0026
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical ...    31   0.53 
AC024859-9|ABQ13045.1|  296|Caenorhabditis elegans Hypothetical ...    30   0.69 
AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical ...    30   0.69 
AL110482-3|CAB60336.1|  339|Caenorhabditis elegans Hypothetical ...    27   6.5  

>AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical
           protein W10D9.4 protein.
          Length = 403

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +1

Query: 400 LREQDRFLPIANIAKIMK 453
           L +Q+RFLPIAN+ +IMK
Sbjct: 59  LLDQERFLPIANVVRIMK 76


>AC024859-9|ABQ13045.1|  296|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14a protein.
          Length = 296

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 295 LDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPI 429
           L  GF VAD+ FV+N+ D +E ++ S    K+     +   FL +
Sbjct: 132 LSVGFAVADERFVINALDFMEKKDPSTHAKKATVLFGDTLEFLEL 176


>AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14b protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 295 LDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPI 429
           L  GF VAD+ FV+N+ D +E ++ S    K+     +   FL +
Sbjct: 173 LSVGFAVADERFVINALDFMEKKDPSTHAKKATVLFGDTLEFLEL 217


>AL110482-3|CAB60336.1|  339|Caenorhabditis elegans Hypothetical
           protein Y39G8B.2 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 128 SLNHCVQIIKERIDVFA*NYIDIYIFIHTLSKW 30
           S N C+Q I E +++F   Y+D+ I IH    W
Sbjct: 87  SRNRCMQQIDEMLEIFETTYMDL-IVIHWPFGW 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,309,306
Number of Sequences: 27780
Number of extensions: 180026
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)