Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0026
(455 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14540.1 68417.m02240 CCAAT-box binding transcription factor ... 43 1e-04
At5g47640.1 68418.m05882 CCAAT-box binding transcription factor ... 40 8e-04
At2g38880.3 68415.m04778 histone-like transcription factor (CBF/... 39 0.002
At2g38880.2 68415.m04777 histone-like transcription factor (CBF/... 39 0.002
At2g38880.1 68415.m04779 histone-like transcription factor (CBF/... 39 0.002
At5g47670.1 68418.m05885 CCAAT-box binding transcription factor ... 38 0.002
At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,... 37 0.006
At2g37060.2 68415.m04548 CCAAT-box binding transcription factor,... 37 0.006
At2g37060.1 68415.m04547 CCAAT-box binding transcription factor,... 37 0.006
At2g13570.1 68415.m01496 CCAAT-box binding transcription factor,... 35 0.030
At2g47810.1 68415.m05967 histone-like transcription factor (CBF/... 33 0.12
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 29 1.1
At1g21970.1 68414.m02749 CCAAT-box binding transcription factor ... 29 1.1
At3g45420.1 68416.m04903 lectin protein kinase family protein co... 29 2.0
At5g43520.1 68418.m05321 DC1 domain-containing protein contains ... 28 3.4
At1g09030.1 68414.m01007 histone-like transcription factor (CBF/... 27 4.5
At5g58000.1 68418.m07256 phosphatase-related weak similarity to ... 27 6.0
At5g17160.1 68418.m02010 expressed protein 27 6.0
At3g45410.1 68416.m04902 lectin protein kinase family protein co... 27 6.0
At1g54926.1 68414.m06272 hypothetical protein 27 6.0
At5g39960.1 68418.m04846 GTP-binding family protein contains Pfa... 27 7.9
At1g01960.1 68414.m00114 guanine nucleotide exchange family prot... 27 7.9
>At4g14540.1 68417.m02240 CCAAT-box binding transcription factor
subunit B (NF-YB) (HAP3 ) (AHAP3) family contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone; similar to LEC1-like protein
(GI:22536010) [Phaseolus coccineus]
Length = 161
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Frame = +1
Query: 352 LEDENNSDSGSKS--NAPLREQDRFLPIANIAKIMK 453
+ D +N G K NA REQDRFLPIAN+++IMK
Sbjct: 1 MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMK 36
>At5g47640.1 68418.m05882 CCAAT-box binding transcription factor
subunit B (NF-YB) (HAP3 ) (AHAP3) family (Hap3b) similar
to CAAT-box DNA binding protein subunit B (NF-YB)
(SP:P25209) (GI:22380) [Zea mays]; contains Pfam PF00808
: Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; identical to cDNA transcription factor
Hap3b (Hap3b) mRNA, partial cds GI:9965734
Length = 190
Score = 39.9 bits (89), Expect = 8e-04
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +1
Query: 367 NSDSGSKSNAPLREQDRFLPIANIAKIMK 453
N+ +G S +P REQDRFLPIAN+++IMK
Sbjct: 15 NNQNGQSSLSP-REQDRFLPIANVSRIMK 42
>At2g38880.3 68415.m04778 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 112
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +1
Query: 379 GSKSNAPLREQDRFLPIANIAKIMK 453
G +S +REQDR+LPIANI++IMK
Sbjct: 12 GGESGGSVREQDRYLPIANISRIMK 36
>At2g38880.2 68415.m04777 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 112
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +1
Query: 379 GSKSNAPLREQDRFLPIANIAKIMK 453
G +S +REQDR+LPIANI++IMK
Sbjct: 12 GGESGGSVREQDRYLPIANISRIMK 36
>At2g38880.1 68415.m04779 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 141
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +1
Query: 379 GSKSNAPLREQDRFLPIANIAKIMK 453
G +S +REQDR+LPIANI++IMK
Sbjct: 12 GGESGGSVREQDRYLPIANISRIMK 36
>At5g47670.1 68418.m05885 CCAAT-box binding transcription factor
family protein / leafy cotyledon 1-related (L1L)
supporting cDNA gi|27372446|gb|AY138461.1|; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone; contains similarity to
CCAAT-binding transcription factor subunit A (CBF-A)
(NF-Y protein chain B) (NF-YB) (CAAT-box DNA binding
protein subunit B) (Swiss-Prot:P25209) [Zea mays]
Length = 234
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +1
Query: 364 NNSDSGSKSNAPLREQDRFLPIANIAKIMK 453
N + +G + +REQDRF+PIAN+ +IM+
Sbjct: 44 NKTSNGGEEECTVREQDRFMPIANVIRIMR 73
>At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 228
Score = 37.1 bits (82), Expect = 0.006
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1
Query: 361 ENNSDSGSKSNAPLREQDRFLPIANIAKIMK 453
E+ D +S +REQDRFLPIANI++IMK
Sbjct: 15 ESGGDQSPRS-LNVREQDRFLPIANISRIMK 44
>At2g37060.2 68415.m04548 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 173
Score = 37.1 bits (82), Expect = 0.006
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1
Query: 361 ENNSDSGSKSNAPLREQDRFLPIANIAKIMK 453
E+ D +S +REQDRFLPIANI++IMK
Sbjct: 16 ESGGDQSPRS-LHVREQDRFLPIANISRIMK 45
>At2g37060.1 68415.m04547 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 173
Score = 37.1 bits (82), Expect = 0.006
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1
Query: 361 ENNSDSGSKSNAPLREQDRFLPIANIAKIMK 453
E+ D +S +REQDRFLPIANI++IMK
Sbjct: 16 ESGGDQSPRS-LHVREQDRFLPIANISRIMK 45
>At2g13570.1 68415.m01496 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 215
Score = 34.7 bits (76), Expect = 0.030
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 370 SDSGSKSNAPLREQDRFLPIANIAKIMK 453
S + +N +EQDRFLPIAN+ +IMK
Sbjct: 24 SSKTNNNNNNNKEQDRFLPIANVGRIMK 51
>At2g47810.1 68415.m05967 histone-like transcription factor
(CBF/NF-Y) family protein contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to LEC1-like protein
(GI:22536010) [Phaseolus coccineus]
Length = 160
Score = 32.7 bits (71), Expect = 0.12
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 373 DSGSKSNAPLREQDRFLPIANIAKIMK 453
D + + ++EQDR LPIAN+ +IMK
Sbjct: 40 DQQQEESMMVKEQDRLLPIANVGRIMK 66
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 259 MDSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLRE 408
M D + N + D+G V DDT + D + +D N D GS + L +
Sbjct: 480 MADDTVSNSMAESDDGDNVEDDTAI---DSMCDDTANDDVGSDDSGSLAD 526
>At1g21970.1 68414.m02749 CCAAT-box binding transcription factor
(LEC1) similar to CAAT-box DNA binding protein subunit B
(NF-YB) (SP:P25209) (GI:22380) [Zea mays]; identical to
GB:AAC39488 GI:3282674 from [Arabidopsis thaliana] (Cell
93 (7), 1195-1205 (1998)); identified in Plant Cell 2003
Jan;15(1):5-18; contains Pfam PF00808 : Histone-like
transcription factor (CBF/NF-Y) and archaeal histone
Length = 238
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = +1
Query: 403 REQDRFLPIANIAKIMK 453
REQD+++PIAN+ +IM+
Sbjct: 58 REQDQYMPIANVIRIMR 74
>At3g45420.1 68416.m04903 lectin protein kinase family protein
contains Serine/Threonine protein kinases active-site
signature, Prosite:PS00108
Length = 667
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 33 FTQCVNKYINVNVVSGEHINSFLDYLNAMI 122
F+ + K I++N+VSGE + ++DY +++
Sbjct: 174 FSDALGKNISINLVSGEPVQVWIDYDGSLL 203
>At5g43520.1 68418.m05321 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 250
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 391 CSYSQSPSCFHLLTHHQN*QQMCHPLPKIHCP 296
C Y SCF L + N HPL +H P
Sbjct: 57 CDYFLHKSCFDLPSETNNKSHQDHPLTLLHSP 88
>At1g09030.1 68414.m01007 histone-like transcription factor
(CBF/NF-Y) family protein contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to CAAT-box DNA binding
protein subunit B (NF-YB) (GI:22380) [Zea mays]
Length = 139
Score = 27.5 bits (58), Expect = 4.5
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +1
Query: 400 LREQDRFLPIANIAKIMK 453
+ ++DR LPIAN+ ++MK
Sbjct: 1 MTDEDRLLPIANVGRLMK 18
>At5g58000.1 68418.m07256 phosphatase-related weak similarity to CTD
phosphatase-like 3 [Arabidopsis thaliana] GI:22212705;
contains Pfam profiles PF02453: Reticulon, PF00533:
BRCA1 C Terminus (BRCT) domain, PF03031: NLI interacting
factor
Length = 1011
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 159 QFCKHYVTLSCKSSTHFFNKRELLLKVDTKISNHG*RRTWK 281
+ C + + L + + +++ LK +T + +G RRTWK
Sbjct: 34 EVCNNAIVLHVTNEDKTSSTKQMTLKDETLLGVNGKRRTWK 74
>At5g17160.1 68418.m02010 expressed protein
Length = 569
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -2
Query: 253 EILVSTFSS--SSRLLKKCVLDLQLSVT*CLQNCVFKDE 143
E++ S +S+ S+RLL+KC+ DL L + N K+E
Sbjct: 151 ELVQSVYSTRRSTRLLEKCMADLSLKTKETVDNKPAKNE 189
>At3g45410.1 68416.m04902 lectin protein kinase family protein
contains Pfam profiles: PF00069 protein kinase domain,
PF00138 legume lectins alpha domain, PF00139 legume
lectins beta domain
Length = 664
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 33 FTQCVNKYINVNVVSGEHINSFLDY 107
F+ + K I++N++SGE I ++DY
Sbjct: 174 FSNALGKNISINLLSGEPIQVWVDY 198
>At1g54926.1 68414.m06272 hypothetical protein
Length = 273
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 388 SYSQSPSCFHLLTHHQN*QQMCHP 317
S S+SPSC +LL+H + Q+ P
Sbjct: 209 STSRSPSCIYLLSHGETDQRSVRP 232
>At5g39960.1 68418.m04846 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 616
Score = 26.6 bits (56), Expect = 7.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 337 NSDDVLEDENNSDSGSKSNAPLR 405
+ DDVL DEN SD +S PL+
Sbjct: 292 SQDDVLTDENLSDEIDESKLPLQ 314
>At1g01960.1 68414.m00114 guanine nucleotide exchange family protein
similar to guanine nucleotide exchange factor [Homo
sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
domain
Length = 1750
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 322 DTFVVNSDDVLEDENNSD-SGSKSNAPLREQDRFL 423
D V S+D++ED +N D + SN LR ++R L
Sbjct: 1500 DFSYVTSEDLMEDVSNEDETNDNSNDALRRRNRQL 1534
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,561,183
Number of Sequences: 28952
Number of extensions: 161527
Number of successful extensions: 455
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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