Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0025
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 45   7e-05
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_47998| Best HMM Match : YTV (HMM E-Value=3.1)                       31   1.2  
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          30   1.6  
SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)               30   2.1  
SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)                 29   2.8  
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_8905| Best HMM Match : FYVE (HMM E-Value=0.13)                      28   8.6  

>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 1/148 (0%)
 Frame = +2

Query: 200 LNPQHTIPMLTDDKFVIWDSHAIATYLLNKYGKGSSYYPEDPEKRALIDMRLHFDSGILY 379
           L+P +T+P+L   +   + S+ I  YL     K    Y  D  +R  +D  L   +    
Sbjct: 43  LSPFNTLPLLETKEGTFFSSNTIIRYLAASSDK---LYGSDLFQRGQVDQWLDITTCDFE 99

Query: 380 PALRENDEPIFFWGETTFKPQGLAKIKSAYDFTEKFLSDSPWIAGDDVTVADMSCVATIG 559
            A+      I   G      + +A I     F EK L+   ++ GD VT+AD S   +I 
Sbjct: 100 AAVAA--VAIAKEGRDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSVATSIA 157

Query: 560 -SLDALLPINEKEYPKITSWLKRCSELD 640
             L +L   + K Y  I SW     E D
Sbjct: 158 VILTSLGDEDRKPYQNIVSWYTALVESD 185


>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -1

Query: 365 CRNVISYRSGLSSLGPRD---SMNCLCRIC--LANM*LLHDCPR*RICHLSA*EWCV 210
           C   +S R  + SL  RD   S++CLCRIC  +    L HD     +CH+    +CV
Sbjct: 24  CVVSLSCRGCVVSLSCRDCVVSVSCLCRICHVVTVSNLSHDVTSSCLCHVVTVSYCV 80


>SB_47998| Best HMM Match : YTV (HMM E-Value=3.1)
          Length = 245

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 36/174 (20%), Positives = 75/174 (43%), Gaps = 4/174 (2%)
 Frame = +2

Query: 20  LSVRTSRNNLTRMVLTLYKM-DASPPVRAVYMVIEALNIPN--VKYVDVDLLAEDHLKEE 190
           L++R +   ++   +T+  + D S P+ + ++ + A+   +  +    V ++A  H+ E 
Sbjct: 43  LAIRDTSEPISSYHVTVPAIRDISEPISSYHVTVPAIRDTSEPISTYHVTVIAIRHISEP 102

Query: 191 FLKLNPQHTIPMLTDDKFVIWDSHAIATYLLNKYGKGSSYYPEDPEKRALIDMRLHFDSG 370
               +   T+P + D    I   H     + +     SSY+   P  R + +    +   
Sbjct: 103 IRSYHV--TVPAIRDTSEPISSYHVTVLAIRDTSEPISSYHVTVPAIRDISEPISSYH-- 158

Query: 371 ILYPALRENDEPIFFWGETTFKPQGLAKIKSAYDFTEKFLSD-SPWIAGDDVTV 529
           +  PA+R+  EPI  +  T    + +++   +Y  T   + D S  I+   VTV
Sbjct: 159 VTVPAIRDTSEPISTYHVTVIAIRHISEPIRSYHVTVPAIRDTSEPISSYHVTV 212


>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +2

Query: 188 EFLKLNPQHTIPMLTDDKFVIWDSHAIATYLLNKYGKGSSYYPEDPEKRA 337
           E+L +NP   +P++  +   +++S     ++   +    +  P+DP KRA
Sbjct: 300 EWLAINPNGLVPVIVHNGNAVYESSICIEFIDEAFSTPVTILPKDPYKRA 349


>SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)
          Length = 693

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 588 SLIGKSASKLPIVATQLISATVTSSPAIHG 499
           S+  +  S +P+V TQ ++ TVTSSP + G
Sbjct: 576 SMSSRVTSCVPLVVTQSLTKTVTSSPIVAG 605


>SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)
          Length = 142

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
 Frame = +2

Query: 320 DPEKRALI-DMRLHFDSGILYPALRENDEPIFFWGETTFKPQGLAKIKSAYDFTEKFLSD 496
           DP KRAL+  + +   SGI  P   +N + + + G       G   I   +   EK L  
Sbjct: 18  DPHKRALVRQISMTIASGI-QPI--QNLKVLQYVGPDKKVEWGHYWIDRGFQCLEKMLVQ 74

Query: 497 SP--WIAGDDVTVADMSCVATIGSLDALLPINEKEYPKITSWLKRCSELDFYQRGN 658
           +   +  GDD+T+AD+  V  + + +    ++   YP I    +   ++D ++  +
Sbjct: 75  TAGKYCVGDDITMADLCLVPQVYNANR-FKVDMSRYPTIARIHEALEQVDAFKEAH 129


>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1332

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +2

Query: 119 EALNIPNVKYVDVDLLAEDHLKEEFL---KLNPQHTIPMLTDDKFVIWDSHA-IATYLLN 286
           + +N   ++ VD+D L+ED L  E     ++N  + +    +    + D HA +   L+ 
Sbjct: 412 KVVNFKKLRSVDIDQLSEDLLNSEHFQNQQVNINNLVIKYDNTLKALLDKHAPLKAKLVT 471

Query: 287 KYGKGSSYYPEDPEKR 334
              K + Y PE  EK+
Sbjct: 472 IRPKAAWYTPEVSEKK 487


>SB_8905| Best HMM Match : FYVE (HMM E-Value=0.13)
          Length = 687

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 307 ILSRGPREESPDRYEITFRQWNIVSC---FARKRRAHFLLGRDHL 432
           I++  P  ++P +  +TF+ WN ++C   F  K    F +   HL
Sbjct: 17  IVANLPMADNPGKGAMTFKFWNCITCSEYFLEKPEVVFRIQHPHL 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,829,678
Number of Sequences: 59808
Number of extensions: 500422
Number of successful extensions: 1310
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)