Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0024
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 31 0.21
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 30 0.28
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 30 0.37
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.5
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 27 2.0
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 2.0
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 27 2.0
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 27 2.0
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 27 2.6
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.0
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 6.0
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 6.0
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 25 7.9
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 25 7.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.9
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 25 7.9
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 7.9
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 7.9
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 25 7.9
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 25 7.9
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 505 ESKRKMSGSDTDVSVKRLKKEESDEDYD-SSHTQQAKNEGNNRTTDSHQELCD 660
ES+ GSD+ S + E S ED D SS + +++E ++ +DS D
Sbjct: 154 ESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSD 206
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 505 ESKRKMSGSDTDVSVKRLKKEESDEDYD-SSHTQQAKNEGNNRTTDSHQELCD 660
ES+ GSD+ S + E S ED D SS + +++E ++ +DS D
Sbjct: 208 ESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSD 260
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 30.3 bits (65), Expect = 0.28
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Frame = -3
Query: 275 VPSAVS-MFIIAALRFTLTLKLY-VPLSPSDPKATGDGDVS-SHLIVGIVE 132
VPSAV +F A+ + ++L L + +SP DP+ G+GDVS S ++ I E
Sbjct: 297 VPSAVKQVFWRIAIFYVVSLILIGLLVSPDDPRLMGNGDVSVSPFVLAIQE 347
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 582 IFIAFFLFESFHADVCIATGHFAFRFNGQFQASLDKFRARLL 457
+F+A+F++ +HA+ I H F G A L FR ++
Sbjct: 166 LFLAYFIYGPWHANDYIKPNHLLFLIVGWAFAVLSNFRTHII 207
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 499 SIESKRKMSGSDTDVS-VKRLKKEESDEDYDSSHTQQAKNEGNN--RTTDSHQELCDL 663
++E K S S +++S V E D D D+ + + + N NN TD +L L
Sbjct: 502 TVERKEGGSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDDDDKLAYL 559
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 499 SIESKRKMSGSDTDVS-VKRLKKEESDEDYDSSHTQQAKNEGNN--RTTDSHQELCDL 663
++E K S S +++S V E D D D+ + + + N NN TD +L L
Sbjct: 502 TVERKEGGSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDDDDKLAYL 559
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 502 IESKRKMSGSDTDVSVKRLKKEESDEDYDS-SHTQQAKNEGNNRTTDSHQE 651
+ KR+ + S++ SV E SDE+ DS TQQ E N + +E
Sbjct: 134 VSIKRRKTESNSQESVDSSNSESSDEESDSEDETQQLLRELENIKQERKRE 184
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 601 QQAKNEGNNRTTDSHQELCDLLDSM 675
Q+ K + T + HQ+L DLL+S+
Sbjct: 919 QKVKEHSEDNTKEKHQQLLDLLESL 943
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 559 KKEESDEDYDSSHTQQAKNEGNNRTTDSHQE 651
++EESDEDYD S T++ E + +S +E
Sbjct: 129 EEEESDEDYDLSPTEEDLVETVSGDEESEEE 159
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 535 TDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSH 645
T++++K+ +EE+DE + S + +NE N T+ ++
Sbjct: 200 TEINLKQKIEEENDEILEDSKESKDENEENKETSTTN 236
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 550 KRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQELCD 660
K L E +DE YD +Q+K + +R +D ++ D
Sbjct: 99 KELLNEYADESYDPMQERQSKKQIQDRESDYQKQRYD 135
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 505 ESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNR 630
E++ ++ G+D +V ++++ D+D D + N NNR
Sbjct: 191 EAQPEVQGNDDEVE----EEDDDDDDEDEDEDEDEDNNNNNR 228
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 502 IESKRKMSGSDTDVSVKRLK-KEESDEDYDSSHTQQAKNEGNNRTTDSHQELCDLLDSMY 678
+ +++K + +D +K KE+S D Q A E N +D +C +L +
Sbjct: 435 VVTEKKETDIKSDAVEHSIKDKEDSKTDKVDDIPQAAPAESNVSESDLRSPICCILGHVD 494
Query: 679 TGK 687
TGK
Sbjct: 495 TGK 497
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 544 SVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQE 651
S KR+ +ESDE+ DSS N ++ E
Sbjct: 21 SSKRISMKESDEESDSSENHPLSESLNKKSKSESDE 56
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 278 FVPSAVSMFIIAALRFTLTLKLYVPLSPSDPKATGDGDVSSHLIVGIVELM 126
F P A+ M I + RF +L + S PK+ + S ++VG+V M
Sbjct: 66 FKPPAIRM-ITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFM 115
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 532 DTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQELCDLLDSMYTGK 687
+TD + KE DE Y + + NE S +E CD+L + GK
Sbjct: 103 ETDADIDFDWKEWLDELYQGVVSGETLNEFKASYQYSEEEKCDVLKAYEKGK 154
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 460 KTCSELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTD 639
K+ E ++ ++ E + K+ TD++ RL KE+ + + K E +N
Sbjct: 1240 KSLRENLERNEEVITELREKIETLKTDLANFRLNKEQLESQLQTEKAAVKKLENSNEEYK 1299
Query: 640 SH-QELCDLLDS 672
H QE+ L+S
Sbjct: 1300 RHNQEILLSLNS 1311
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 475 LIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDY 585
L+ G S+ RK++ SD+D+ ++ + ++S EDY
Sbjct: 431 LVIWGKLKSLYLNRKVTKSDSDLELQVIGVDKSQEDY 467
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +1
Query: 100 YKDIMNATSMSSTIPTIKCEDTSPSPVALGSDGESGTYNLS 222
YKD N S + TI+C + V S E NL+
Sbjct: 407 YKDSCNRKSNQKNVGTIRCSNLCTEIVEYSSPDEVAVCNLA 447
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 198 SVRS*SNRRWRCILTFNCR 142
+++S S+ RW+ +L F CR
Sbjct: 981 AIKSSSSSRWKSLLAFKCR 999
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 497 SFRPALISSEHVFCMLGGVLEDGDVADEPLDIEELESFP 381
++ P+L+SS + G G+ ++ P I LES P
Sbjct: 122 AWTPSLLSSNATSYLHSGSSPHGNTSNHPSPISSLESLP 160
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 535 TDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQELCDLLD 669
T S K KEE D + + +A+ ++DS +EL +L+D
Sbjct: 342 TATSEKESIKEEVDLEVNGDGKVEAEERIELESSDSEKELSELID 386
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.125 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,273
Number of Sequences: 5004
Number of extensions: 51422
Number of successful extensions: 148
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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