Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0024
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522... 33 0.22
11_06_0710 - 26492093-26493460 31 1.2
05_05_0016 - 21542300-21542886,21542956-21543286,21543310-215434... 29 2.7
08_01_0406 + 3607088-3607231,3608900-3608996,3609121-3609185,361... 29 3.5
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 29 3.5
04_04_0664 - 27066253-27067155,27067242-27067508,27067707-270683... 29 4.7
06_01_1093 - 8970996-8971667,8971756-8971902,8971982-8972118,897... 28 6.2
01_06_1577 - 38379951-38380167,38380349-38380543,38380919-383811... 28 6.2
04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424... 28 8.2
>02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,
5222445-5222793,5223189-5223510,5223621-5224123,
5224486-5224578,5224708-5224759,5224837-5225129,
5225208-5225630,5225734-5226070,5226185-5226220,
5226272-5226589,5227465-5228450
Length = 1637
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 136 TIPTIKCED-TSPSPVALGSDGESGTYNLSVNVNLSAAMINMLTAEGTNTTLRTPEIVND 312
T+P ++ ED T S S + N +V + + TA+ + L TPE +N
Sbjct: 891 TVPLVESEDKTQKSSSTTASKRTNALQNPAVMAAVRGGSYDSTTAKNNASPLVTPEQINS 950
Query: 313 VITMTNPLDQ 342
I+ N LDQ
Sbjct: 951 FISNINLLDQ 960
>11_06_0710 - 26492093-26493460
Length = 455
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +1
Query: 505 ESKRKMSGSDTDVSVKRLKK----EESDEDYDSSHTQQAKNEGNNRTTDSHQE 651
+SK+K S D D + K+ KK + SDE+ D +++K++ + ++D E
Sbjct: 193 KSKKKSSDEDNDGAKKKKKKKSKGKSSDEEDDEKPKKKSKSKSKSSSSDEEDE 245
>05_05_0016 -
21542300-21542886,21542956-21543286,21543310-21543419,
21543526-21544069,21544190-21544345
Length = 575
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +1
Query: 472 ELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHT--QQAKNEGNNRTTDSH 645
E++ K ++ RK S + DV V+ ++ +E D + + +NEGN DS
Sbjct: 278 EIVPDSGKKKKKAARKSSSDEDDVEVEENEENSDNEGNDGNEELGENEENEGNETGEDSS 337
Query: 646 QELCDLLDS 672
D DS
Sbjct: 338 SSDDDSSDS 346
>08_01_0406 +
3607088-3607231,3608900-3608996,3609121-3609185,
3610268-3610372,3610492-3610554,3610801-3610834,
3610921-3611043,3611269-3611362,3611452-3611497,
3611692-3611759,3611843-3611891,3612032-3612097,
3612443-3612475
Length = 328
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 615 IFGLLRVTAIVIFIAFFLFESFHADVCI 532
++ +R ++V F+ FF+F S H C+
Sbjct: 237 LYSAMRTDSMVTFVQFFVFYSIHVGFCV 264
>03_02_1012 +
13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = -2
Query: 198 SVRS*SNRRWRCILTFNCR 142
+++S S++RW+ +L+FNCR
Sbjct: 660 AIKSSSSQRWKTLLSFNCR 678
>04_04_0664 -
27066253-27067155,27067242-27067508,27067707-27068368,
27068479-27069047,27070011-27070108
Length = 832
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 505 ESKRKMSGSDTDVSVKRLKKEESDEDYDSS--HTQQAKNEGNNRTTDSHQELCDLLDS 672
++ RKMS + D+ V+ ++ ++ D + H + +NEGN S D DS
Sbjct: 288 KAARKMSSDEDDIEVEENEENTDNDGNDGNEEHVENEENEGNKSGEGSLSSDDDSSDS 345
>06_01_1093 -
8970996-8971667,8971756-8971902,8971982-8972118,
8972343-8972612,8972731-8972868,8974965-8975394
Length = 597
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 344 YWSRGFVMVMTSFTISGVRSVVFVPSAVSMFIIAALRFTLTLKLYVPLSP 195
Y R F++ +SG + F +AVS FI+ A+ ++L + V + P
Sbjct: 207 YGFRVFLLTFCYVMVSGYNTGKFTDTAVSRFILIAIGAAVSLGINVGIYP 256
>01_06_1577 -
38379951-38380167,38380349-38380543,38380919-38381191,
38381281-38381455,38381925-38382035,38382120-38382390,
38382990-38383139,38383242-38384246
Length = 798
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 505 ESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQ 648
+S +G D + S ++ E+SD + ++A+ G+ TTD Q
Sbjct: 156 QSDGSKNGDDEEKSEEKKDDEQSDGERKDDQEEKAEGSGSKDTTDQPQ 203
>04_04_1121 -
31041629-31041793,31041891-31042022,31042255-31042425,
31042521-31042622,31042703-31042807,31043115-31043286,
31043916-31043980,31044179-31044502,31044729-31044846,
31044928-31045011,31045472-31045603,31045714-31046570,
31046735-31046849,31047371-31047481,31047763-31047824
Length = 904
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 481 KAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQELCD 660
+A +L IESK+ +D D ++KK SD + DS + +++ + DS E D
Sbjct: 236 EASEELKIESKQGKDMTDMDFFKSKIKKNWSDSESDSEDSGD-QSDHSTDDEDSSDESHD 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.125 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,514,908
Number of Sequences: 37544
Number of extensions: 330842
Number of successful extensions: 797
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -