Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0024
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22179-5|CAA80162.2| 786|Caenorhabditis elegans Hypothetical pr... 30 1.4
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 30 1.8
Z77655-3|CAB01134.1| 426|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical pr... 29 3.2
U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormon... 29 4.2
U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone... 29 4.2
AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear recep... 29 4.2
AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear recep... 29 4.2
U29380-10|AAO38582.1| 454|Caenorhabditis elegans Hypothetical p... 28 5.6
U29380-9|AAA68745.1| 472|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z19158-1|CAA79574.1| 788|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z54342-16|CAA91156.1| 755|Caenorhabditis elegans Hypothetical p... 27 9.8
Z47072-4|CAA87370.1| 755|Caenorhabditis elegans Hypothetical pr... 27 9.8
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 9.8
AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protei... 27 9.8
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 9.8
>Z22179-5|CAA80162.2| 786|Caenorhabditis elegans Hypothetical
protein F58A4.5 protein.
Length = 786
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +1
Query: 481 KAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQELCD 660
+A L S + +MS S + S E SDE YDS+ + K G QE+
Sbjct: 256 EANLSASQVANAEMSASISASSANSSSDESSDEAYDSAEIEMRKKIGKTVIAMKSQEMAS 315
Query: 661 LLD 669
D
Sbjct: 316 QSD 318
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 505 ESKRKMSGSDTDVSVKRLKKEES--DEDYDSSHTQQAKNE-GNNRTTDSHQEL 654
E KRK + S++D LKKE+ ED+ ++ K E ++TDS ++L
Sbjct: 1031 EKKRKHNRSESDSDDNSLKKEKKHRKEDHPKEKEKEKKKEKEQEKSTDSEKDL 1083
>Z77655-3|CAB01134.1| 426|Caenorhabditis elegans Hypothetical
protein C56A3.3 protein.
Length = 426
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 682 PYTLSQVDHTVPDGYRSSCCSLHFWLVAC-DCYRNL 578
PYT +T+P GY + CS++F + A DC+ N+
Sbjct: 105 PYTTV---YTLPFGYMAQTCSIYFTVAAAVDCFVNV 137
>Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical
protein K07C10.1 protein.
Length = 851
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 660 ITQFLMAIGRPVVPFIFGLLRVTAIVIFIAFFLFESFHADVCIAT 526
IT L A+GRPVV L A + + ++ +SF V + T
Sbjct: 762 ITSVLQAVGRPVVEASLTTLLCMAPLFVVPVYMIQSFAKTVTLVT 806
>U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform b protein.
Length = 486
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 159 GYIAIAGCFRI*RR--KWNVQFEC*CESKCCYDKH 257
G IA GC RR + N ++ C ESKC DKH
Sbjct: 34 GAIACNGCKGFFRRTVRRNYEYHCRFESKCEIDKH 68
>U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform a protein.
Length = 542
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 159 GYIAIAGCFRI*RR--KWNVQFEC*CESKCCYDKH 257
G IA GC RR + N ++ C ESKC DKH
Sbjct: 90 GAIACNGCKGFFRRTVRRNYEYHCRFESKCEIDKH 124
>AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 487
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 159 GYIAIAGCFRI*RR--KWNVQFEC*CESKCCYDKH 257
G IA GC RR + N ++ C ESKC DKH
Sbjct: 35 GAIACNGCKGFFRRTVRRNYEYHCRFESKCEIDKH 69
>AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 508
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 159 GYIAIAGCFRI*RR--KWNVQFEC*CESKCCYDKH 257
G IA GC RR + N ++ C ESKC DKH
Sbjct: 56 GAIACNGCKGFFRRTVRRNYEYHCRFESKCEIDKH 90
>U29380-10|AAO38582.1| 454|Caenorhabditis elegans Hypothetical
protein ZK546.14b protein.
Length = 454
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 529 SDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDS 642
+D V+ K+ K+E SD+D DS ++ EGNN ++
Sbjct: 130 TDEPVAKKQKKEESSDDDEDSEDGEEP--EGNNGAVEA 165
>U29380-9|AAA68745.1| 472|Caenorhabditis elegans Hypothetical
protein ZK546.14a protein.
Length = 472
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 529 SDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDS 642
+D V+ K+ K+E SD+D DS ++ EGNN ++
Sbjct: 148 TDEPVAKKQKKEESSDDDEDSEDGEEP--EGNNGAVEA 183
>Z19158-1|CAA79574.1| 788|Caenorhabditis elegans Hypothetical
protein T23G5.1 protein.
Length = 788
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/84 (23%), Positives = 32/84 (38%)
Frame = +1
Query: 100 YKDIMNATSMSSTIPTIKCEDTSPSPVALGSDGESGTYNLSVNVNLSAAMINMLTAEGTN 279
YKD N S + TIKC + + + E NL+ S A+ +T E
Sbjct: 413 YKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLA-----SIALNRYVTPEKKF 467
Query: 280 TTLRTPEIVNDVITMTNPLDQYNY 351
++ E+ + N + NY
Sbjct: 468 DFVKLAEVTKVITRNLNKIIDVNY 491
>Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical
protein C09H6.2b protein.
Length = 954
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 484 AGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRT 633
AG + E KRK+SG TD +++ E E S + K G + T
Sbjct: 209 AGGEEKSEEKRKLSGDRTDSLIRKQMSEMEKEITRRSQNKNIKTSGLSYT 258
>Z54342-16|CAA91156.1| 755|Caenorhabditis elegans Hypothetical
protein F26C11.1 protein.
Length = 755
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 466 CSELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNE 618
CSE + G + ++K + + KR KK+E ++D + +AKN+
Sbjct: 223 CSEKLNYGTRKRQVVQKKRAVRKWEKERKRTKKDEEEDDDVELNQHEAKNQ 273
>Z47072-4|CAA87370.1| 755|Caenorhabditis elegans Hypothetical
protein F26C11.1 protein.
Length = 755
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 466 CSELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNE 618
CSE + G + ++K + + KR KK+E ++D + +AKN+
Sbjct: 223 CSEKLNYGTRKRQVVQKKRAVRKWEKERKRTKKDEEEDDDVELNQHEAKNQ 273
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
C23F12.1b protein.
Length = 2747
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 153 FNCRYSRAHARCVHYILVRSQFCCFFILFYFGNFSNKIIGT 31
FN S ++ +RS C F+LF F NF +I T
Sbjct: 1968 FNSPNSDKYSNHFQIFQIRSCLCACFVLFIFFNFKIHVIFT 2008
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 266 AVSMFIIAALRFTLTLKLYVPLS 198
AVSMF+I R T+ L+LYV S
Sbjct: 150 AVSMFVILTQRLTVQLQLYVSKS 172
>AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protein
protein.
Length = 954
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 484 AGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRT 633
AG + E KRK+SG TD +++ E E S + K G + T
Sbjct: 209 AGGEEKSEEKRKLSGDRTDSLIRKQMSEMEKEITRRSQNKNIKTSGLSYT 258
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 266 AVSMFIIAALRFTLTLKLYVPLS 198
AVSMF+I R T+ L+LYV S
Sbjct: 150 AVSMFVILTQRLTVQLQLYVSKS 172
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.309 0.125 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,587,325
Number of Sequences: 27780
Number of extensions: 299887
Number of successful extensions: 858
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -