Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0024
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein si... 33 0.14
At5g02950.1 68418.m00238 PWWP domain-containing protein predicte... 33 0.24
At5g27280.1 68418.m03256 zinc finger (DNL type) family protein c... 32 0.42
At5g67140.1 68418.m08464 F-box family protein similar to unknown... 31 0.97
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot... 31 0.97
At2g34300.1 68415.m04196 dehydration-responsive protein-related ... 30 1.7
At5g64980.1 68418.m08173 expressed protein 29 3.0
At5g05610.2 68418.m00611 PHD finger family protein contains Pfam... 29 3.9
At5g05610.1 68418.m00610 PHD finger family protein contains Pfam... 29 3.9
At5g33898.1 68418.m04020 hypothetical protein 28 6.8
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 28 6.8
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 28 6.8
At2g35700.1 68415.m04378 AP2 domain-containing transcription fac... 28 6.8
At1g63430.1 68414.m07173 leucine-rich repeat transmembrane prote... 28 6.8
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi... 28 6.8
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 27 9.0
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 27 9.0
At3g57300.1 68416.m06378 transcriptional activator, putative sim... 27 9.0
>At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein
similar to beta-galactosidase GI:7939621 from
[Lycopersicon esculentum]; contains Pfam profile PF01301
: Glycosyl hydrolases family 35
Length = 988
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 460 KTCSELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDE-DYDSSHTQQAKNEGNNRTT 636
K C E++K L+++ K + D K+ K+E +E D D ++ +++ N T
Sbjct: 752 KGCPEIVKT---LAVQVKCEKKEGKQDEKKKKEDKDEEEEDDEDDDEEEEEEDKENKDTK 808
Query: 637 DSHQELCDLLDS 672
D + D+LDS
Sbjct: 809 DMENKNQDILDS 820
>At5g02950.1 68418.m00238 PWWP domain-containing protein predicted
protein, Arabidopsis thaliana
Length = 632
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 505 ESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQ 606
E KRK+ S++ S KR+KK + ED S H+ +
Sbjct: 350 EKKRKVESSESGKSEKRIKKSQQKEDSVSKHSNE 383
>At5g27280.1 68418.m03256 zinc finger (DNL type) family protein
contains Pfam profile PF05180: DNL zinc finger
Length = 212
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 496 LSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQELCDLL 666
LSI S +K + S + RL ++ D+DYD H++ + T S+ E L+
Sbjct: 20 LSIFSPKKRTDSSPPPRIVRLSNKKEDKDYDPQHSESNSSSLFRNRTLSNDEAMGLV 76
>At5g67140.1 68418.m08464 F-box family protein similar to unknown
protein (dbj|BAA78736.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 228
Score = 30.7 bits (66), Expect = 0.97
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -2
Query: 351 VIILVQGVCHGDDIVYNLRRTKRSICSLGGQHVYHSST*IHINTQIVRSTFSVRS*--SN 178
V+ GVC N +R S G + ST +++V F+++ S
Sbjct: 27 VLAQASGVCKKWRKAVNQSMARRETLSFAGWKMDDDST-----SRLVHLAFNLKELDISR 81
Query: 177 RRWRCILTFNCRYSRAHARCV 115
RW C +T N Y A ARCV
Sbjct: 82 SRWGCHITDNGLYQIASARCV 102
>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 438
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 547 VKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQELCD 660
+KR+KK + +++ Q KN+GN + + HQ+ D
Sbjct: 333 LKRIKKNSPQKGKETTSKNQKKNDGNVKKENDHQKKSD 370
>At2g34300.1 68415.m04196 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 770
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 523 SGSDT--DVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQELCD 660
S +DT DVS L+KEE D D + KNE N T+++Q D
Sbjct: 51 SSTDTAKDVSKNDLRKEEGDRD--PKNFSDEKNEENEAATENNQVKTD 96
>At5g64980.1 68418.m08173 expressed protein
Length = 344
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/68 (17%), Positives = 37/68 (54%)
Frame = +1
Query: 469 SELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQ 648
S L+K +++ + ++SGS + V +R +S + + ++++ ++ R+ ++++
Sbjct: 144 SSLVKPSIRVQSRTNNELSGSSSKVPGRRRSSRKSVQPWSPDYSEKLRS-WKKRSNNNNR 202
Query: 649 ELCDLLDS 672
+ L D+
Sbjct: 203 DFSQLFDN 210
>At5g05610.2 68418.m00611 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 241
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +1
Query: 565 EESDEDYDSSHTQQAKNE-GNNRTTDSHQELCDLLDSMYTGK 687
EES ED D H G N T D CD+ + Y GK
Sbjct: 173 EESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGK 214
>At5g05610.1 68418.m00610 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 241
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +1
Query: 565 EESDEDYDSSHTQQAKNE-GNNRTTDSHQELCDLLDSMYTGK 687
EES ED D H G N T D CD+ + Y GK
Sbjct: 173 EESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGK 214
>At5g33898.1 68418.m04020 hypothetical protein
Length = 248
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 562 KEESDEDYDSSHTQQAKNEGNNRTTDSHQE 651
+E+ DED DS+ ++ KN+ N ++S+ E
Sbjct: 92 EEDDDEDEDSNPWKRVKNDKKNEASNSNLE 121
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 454 IQKTCSELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRT 633
++ T S + G + + ++ SG+DT KE D DSS T+ K E NNR
Sbjct: 432 VESTDSSNTQKGDEQKTDESKRESGNDTS------NKETED---DSSKTESEKKEENNRN 482
Query: 634 TDSHQ 648
++ +
Sbjct: 483 GETEE 487
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 550 KRLKKEESDEDYDSSHT----QQAKNEGNNRTTD-SHQELCDLLDSMYT 681
+R KKEE +ED D +T KNEG N+ + + L + +D +++
Sbjct: 309 QRKKKEEEEEDGDDKNTIEKKMMMKNEGENKESKVTLSGLLNFIDGLWS 357
>At2g35700.1 68415.m04378 AP2 domain-containing transcription
factor, putative pFAM domain (PF00847)
Length = 194
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 121 TSMSSTIPTIKCEDTSPSPVALGSDGESGTYNLSVNVN 234
TS S PT+ E +SP+ +AL D S +L +NVN
Sbjct: 137 TSSPSPSPTVT-ETSSPAMIALSDDAFSDLPDLLLNVN 173
>At1g63430.1 68414.m07173 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profiles: PF00069
Eukaryotic protein kinase domain, PF00560 Leucine Rich
Repeat; contains 1 predicted transmembrane domain
Length = 664
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 502 IESKRKMSGSDTDVSVKRLKKEESD---EDYDSSHTQQAKNEGNNRTTDSHQELCDLLDS 672
+E+ MSG D +K +E+ + E + N NN S QELC+ L+S
Sbjct: 582 LEAPEAMSGL-VDPELKHFNQEDLETVCEVASQCLNRDPTNNNNNHNKPSVQELCETLES 640
Query: 673 MYTGKLTPE 699
+ ++ E
Sbjct: 641 RISLSISAE 649
>At1g01440.1 68414.m00059 extra-large G-protein-related weak
similarity to extra-large G-protein (AtXLG1)
(GI:3201682) [Arabidopsis thaliana]
Length = 664
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/69 (27%), Positives = 29/69 (42%)
Frame = +1
Query: 469 SELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRTTDSHQ 648
+E + ++ ++ GS V R K+EE+D D SS +N T
Sbjct: 28 NESATSPMRNRLDDSNSRPGSQRFVKSSR-KEEETDSDSSSSKNTTTRNNPIQYTDKQQA 86
Query: 649 ELCDLLDSM 675
EL LDS+
Sbjct: 87 ELLRKLDSI 95
>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 255
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/78 (23%), Positives = 29/78 (37%)
Frame = +1
Query: 454 IQKTCSELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGNNRT 633
+ S K+ K ES+ K S + + ++ +ED D Q G +
Sbjct: 151 VSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYA 210
Query: 634 TDSHQELCDLLDSMYTGK 687
D CDL + + GK
Sbjct: 211 ADEFWICCDLCEMWFHGK 228
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family; similar to
Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin
(Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar
to mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 390 VISASVLETGILFVIILVQGVCHGDDIVYNLRRTKRSICSLGGQHVY 250
V S +L G VI+ V G C+ +LR I SL G+H Y
Sbjct: 198 VASLEILGNG---VIVHVNGKCYQKSTCVHLRGGDEVIFSLNGKHAY 241
>At3g57300.1 68416.m06378 transcriptional activator, putative
similar to transcriptional activator SRCAP [Homo
sapiens] GI:5106572; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain
Length = 1507
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -2
Query: 198 SVRS*SNRRWRCILTFNCR 142
+++S S+ RW+ +L+FNCR
Sbjct: 724 AIKSSSSIRWKTLLSFNCR 742
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.125 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,511,843
Number of Sequences: 28952
Number of extensions: 271755
Number of successful extensions: 818
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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