Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0023
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 48 2e-06
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 29 0.85
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 28 1.1
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 28 1.5
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 28 1.5
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 27 2.0
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.5
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 4.5
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 26 4.5
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 26 4.5
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.5
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 6.0
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 26 6.0
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 7.9
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 47.6 bits (108), Expect = 2e-06
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Frame = +2
Query: 47 FFICGTDEKQFNKTLLPVFLSHLGTGTSMKTILHFAQEIDAAGRFQQFDYGPTNNMIIY- 223
FF+ T K ++T V SHL + TS+K +H+AQ I Q +D P Y
Sbjct: 300 FFLSWTG-KNISETQKIVAYSHLYSFTSVKCFVHWAQ-ITRRKVLQMYDDSPGFKPSYYT 357
Query: 224 NSETPPEYDLRKITLPIYLLYSRNDLLSSEQDVDKLYQDLETRTEIYLVPDPEFNHVDYL 403
N Y + I LPI L+Y ND + D++ L L ++ +P+ + H+D +
Sbjct: 358 NLNRIARYPIENIRLPITLVYGSND---NMVDIETLKTQLPPLSQCIQIPN--YEHLDII 412
Query: 404 MANDAPRLLNDKVLQFL 454
M + ++ +V++ L
Sbjct: 413 MGDTKKDIVIQQVVEQL 429
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 28.7 bits (61), Expect = 0.85
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 170 AGRFQQFDYGPTNNMIIYNSETPPEYDLRKITL 268
AG+ + F P ++I NS T P YDL+++ +
Sbjct: 81 AGKHEYFCVYPNASLIKQNSTTEPSYDLQELRI 113
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 320 VDKLYQDLETRTEIYLVPDPEFNHVDYLMA---NDAPRLLNDKVLQFLLAAFADHQGPD 487
+ +++ ++ ++ L DP FN +D MA ND+ L + ++Q L A D P+
Sbjct: 397 IKRIFNEISPLNKLDLNSDPRFNELDSDMALDSNDSLPLDHSSIIQRYLNAHPDPLSPE 455
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +2
Query: 89 LLPVFLSHLGTGTSMKTILHFAQEIDAAGRFQQFDYGPTNNMIIYNSETP----PEYDLR 256
L +F + + TG + H + ++ + P N ++ + P+Y +
Sbjct: 637 LSDLFSNLVCTGEDANCLFHLLENVNVTAFDSDYTLKPFNQLMSFIESLAVQKLPDYVNQ 696
Query: 257 KITLPIYLLYSRNDLLSS 310
+L YLLYS ND LS+
Sbjct: 697 IGSLSQYLLYSTNDELSN 714
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 224 NSETPPEYDLRKITLPIYLLYSRNDLLSSEQDVDKLYQDLETRTEIYLVPD 376
N + E+ ++K+ + LL S N L + K Y + E T+IYLV D
Sbjct: 62 NKKKHDEHKIKKLRNEVLLLQSLNHPL-----LCKFYSEFEDETKIYLVTD 107
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +2
Query: 359 IYLVPDPEFNHVDYLMANDAPRLLNDKVLQFLLAAFADHQGPDRHMGTRESVRQYKASRK 538
++L+P P+ HV +++ + P FL+ F + + + E+V + K + K
Sbjct: 257 LFLLPKPDEQHVVFVIGLEPPLRQGQTRYPFLVTQFVRDEDMEVDLNIEETVLKEKYADK 316
Query: 539 V 541
V
Sbjct: 317 V 317
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 282 CTQGMIYCLANKMLINCTKIWK 347
CT G IY + N +LI +++WK
Sbjct: 281 CTIGSIYGMINLVLIAFSEVWK 302
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 260 FCADRILVEFLNCILSYYWWV 198
F A+ +LV F NC L YY +V
Sbjct: 2153 FAAEHMLVFFQNCKLDYYRYV 2173
>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 510
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 263 TLPIYLLYSRNDLLSSEQDVDKLYQDLE 346
T+PI L Y ND L + +KL + LE
Sbjct: 356 TVPILLFYGENDFLCNYLSGEKLTRSLE 383
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 282 CTQGMIYCLANKMLINCTKIWK 347
CT G IY + N +LI +++WK
Sbjct: 281 CTIGSIYGMINLVLIAFSEVWK 302
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 282 CTQGMIYCLANKMLINCTKIWK 347
CT G IY + N +LI +++WK
Sbjct: 281 CTIGSIYGMINLVLIAFSEVWK 302
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 486 SGPWWSAKAASKNCNTLSFKSLGASFAIR*STWLNSGSG 370
SGP +A + NC+ S KS G S+ +NS +G
Sbjct: 304 SGPLSTASSIPSNCSCPSVKSSGPSYHAEQEVNVNSYNG 342
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/44 (20%), Positives = 23/44 (52%)
Frame = +2
Query: 164 DAAGRFQQFDYGPTNNMIIYNSETPPEYDLRKITLPIYLLYSRN 295
+ A F++FD+ +++Y T P++ + + +P+ + N
Sbjct: 566 ERAHHFRRFDFRGVKAVVMYGPPTNPQFYVELVRMPMRTISEGN 609
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 211 YDNIQFRNSTRIRSAQNHSSHLPAV 285
+ N FR TR+ S ++SS LP++
Sbjct: 98 FKNFPFRPPTRLTSTPSNSSSLPSI 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,085
Number of Sequences: 5004
Number of extensions: 62694
Number of successful extensions: 203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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