Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0023
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.91 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.91 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 538 SVEHVRWGATVESGPATASC 597
           ++ H+RW +     PA  SC
Sbjct: 505 AINHIRWNSAFAIAPAVISC 524


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 538 SVEHVRWGATVESGPATASC 597
           ++ H+RW +     PA  SC
Sbjct: 595 AINHIRWNSAFAIAPAVISC 614


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 695 WSMYNWTTCRCDHDNC 648
           +S  N T C+CD  NC
Sbjct: 663 YSSNNKTLCKCDAQNC 678


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 6   GSDDVDTYVCKTQYSS 53
           G ++++TY+  T YSS
Sbjct: 193 GMNNIETYIVNTNYSS 208


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 6   GSDDVDTYVCKTQYSS 53
           G ++++TY+  T YSS
Sbjct: 193 GMNNIETYIVNTNYSS 208


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 287 SRNDLLSSEQDVDKLYQDLETR 352
           S NDLL+   ++D++Y D   +
Sbjct: 536 SFNDLLTQVAELDQIYADTHAK 557


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 294 MIYCLANKMLINC 332
           M++C++  M+INC
Sbjct: 101 MMFCMSPPMVINC 113


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 544 EHVRWGATVESGPATASCPLFA 609
           +HV++  T  SGP   S P+ A
Sbjct: 174 DHVQFLITNTSGPGVVSNPMIA 195


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 294 MIYCLANKMLINC 332
           M++C++  M+INC
Sbjct: 67  MMFCMSPPMVINC 79


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 544 EHVRWGATVESGPATASCPLFA 609
           +HV++  T  SGP   S P+ A
Sbjct: 174 DHVQFLITNTSGPGVVSNPMIA 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,883
Number of Sequences: 438
Number of extensions: 5047
Number of successful extensions: 32
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)