Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0020
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 251 3e-67
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 251 3e-67
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 250 6e-67
11_01_0033 - 251730-251855,252068-252144,252228-252318,252644-25... 60 2e-09
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26... 56 4e-08
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 35 0.071
06_01_0080 + 644021-645463 33 0.29
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.66
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 2.7
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 29 3.5
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 29 4.7
03_04_0243 + 19298293-19299117 28 6.2
11_01_0355 + 2679561-2680985,2681183-2682295 28 8.1
10_08_0406 - 17688069-17690643,17691065-17691132 28 8.1
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 28 8.1
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 28 8.1
02_03_0134 - 15596379-15597689 28 8.1
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 251 bits (615), Expect = 3e-67
Identities = 123/211 (58%), Positives = 156/211 (73%), Gaps = 2/211 (0%)
Frame = +3
Query: 69 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 248
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 249 KAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 422
+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 423 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 602
VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I
Sbjct: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGI 183
Query: 603 SPFSYGLVVKQVYDSGTIFAPEILDIKPEDL 695
PFSYGLV+ VYDSG++F+PE+LD+ EDL
Sbjct: 184 RPFSYGLVITNVYDSGSVFSPEVLDLTEEDL 214
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 251 bits (615), Expect = 3e-67
Identities = 123/211 (58%), Positives = 156/211 (73%), Gaps = 2/211 (0%)
Frame = +3
Query: 69 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 248
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 249 KAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 422
+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 423 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 602
VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I
Sbjct: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGI 183
Query: 603 SPFSYGLVVKQVYDSGTIFAPEILDIKPEDL 695
PFSYGLV+ VYDSG++F+PE+LD+ EDL
Sbjct: 184 RPFSYGLVITNVYDSGSVFSPEVLDLTEEDL 214
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 250 bits (613), Expect = 6e-67
Identities = 122/211 (57%), Positives = 156/211 (73%), Gaps = 2/211 (0%)
Frame = +3
Query: 69 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 248
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 249 KAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 422
+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 423 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 602
VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I
Sbjct: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGI 183
Query: 603 SPFSYGLVVKQVYDSGTIFAPEILDIKPEDL 695
PFSYGLV+ VYDSG++F+PE+LD+ +DL
Sbjct: 184 RPFSYGLVITNVYDSGSVFSPEVLDLTEDDL 214
>11_01_0033 -
251730-251855,252068-252144,252228-252318,252644-252704,
252800-252858,252955-253045,253238-253406,253760-253787
Length = 233
Score = 60.1 bits (139), Expect = 2e-09
Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 5/226 (2%)
Frame = +3
Query: 27 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 206
K R+ TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+
Sbjct: 3 KSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLK 62
Query: 207 GSS-IVLMGKNTMMRKAIKDHLDN-NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENK 380
SS I L GK M + D L KL ++G+ G FT +V E +
Sbjct: 63 SSSRIFLAGKKVMQIALGRSSADEAKTGLHKLSKFLQGDTGLFFTNLPRDDVERLFREFE 122
Query: 381 VQAPARPGAIAPLSVVI-PAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 557
AR G+I +V + E F + +P +++KG +E++ D + + G
Sbjct: 123 EHDFARTGSIVTETVELKEGPLEQFTHEMEPFLRKQGLPVRLNKGAVELVADHIVCEEGK 182
Query: 558 KVGASEATLLNML--NISPFSYGLVVKQVYDSGTIFAPEILDIKPE 689
+ A L +L ++ F LV + D ++ + ++ E
Sbjct: 183 PISPEAAQTLRLLGMQMATFRLYLVCRWSSDDFEVYKEGLAQLRAE 228
>12_01_0032 -
266954-267079,267204-267245,267290-267366,267450-267540,
267864-267924,268021-268079,268176-268266,268481-268698,
268818-268824,269013-269148,270064-270307
Length = 383
Score = 55.6 bits (128), Expect = 4e-08
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 3/186 (1%)
Frame = +3
Query: 39 SPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS- 215
S TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+ SS
Sbjct: 143 SSAVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSR 202
Query: 216 IVLMGKNTMMRKAIKDHLDN-NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP 392
I L GK M + D L KL ++G+ G FT +V E +
Sbjct: 203 IFLAGKKVMQIALGRSPADEAKTGLHKLSKFLQGDTGLFFTNLPRDDVERLFREFEEHDF 262
Query: 393 ARPGAIAPLSVVI-PAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 569
AR G+IA +V + E F + +P +++KG +E++ D + + G +
Sbjct: 263 ARTGSIATETVELKEGPLEQFTHEMEPFLRKQGMPVRLNKGAVELVADHIVCEEGKPISP 322
Query: 570 SEATLL 587
A L
Sbjct: 323 EAAQTL 328
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 34.7 bits (76), Expect = 0.071
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Frame = +3
Query: 195 ISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDK 365
I L + L+ + ++ L N AL+KL LPH ++GN+GF+ + + ++ D
Sbjct: 372 IGLLQKLVYLLLSANQLSGSVPRTLGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDL 431
Query: 366 LLENKVQAPARPGAIAPLSV----VIPAHN--TGLGPEKTSFFQALSI 491
+L++ A P + LS I HN G PEK S +L +
Sbjct: 432 ILDHNSFVGALPDHLGNLSARLISFIADHNKLAGSLPEKMSNLSSLEL 479
>06_01_0080 + 644021-645463
Length = 480
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 533 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGND 426
I+D N N R K++EERGLL+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.5 bits (68), Expect = 0.66
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +3
Query: 279 PALEK-LLPHIKGN---VGFVFTRGDLVEV--RDKLLENKVQAPARPGAIAPLSVVIPA 437
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +3
Query: 519 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 671
E++ +++P D VG S +++ +++ P+S VV+ +Y+S + A +I
Sbjct: 346 EMLPSGFLIRPSD-VGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKI 395
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 649 PESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL 527
PE LT RP +G+ FN LR ++ +PT G + S+
Sbjct: 358 PEKNEPLTLRPIASGK-FNQLRTISIISPTAKEGLQKTVSM 397
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 335 GEHEANVALDVWQQFLEGWIVVQVVFDGFAHH 240
G HEA+ L W+ + GW + F GFA H
Sbjct: 189 GNHEASNYL--WELYYGGWAAPNIYFLGFAGH 218
>03_04_0243 + 19298293-19299117
Length = 274
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -3
Query: 430 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLMCGNSFS 287
+ TD+ + APG A A + S SRTS +P ++ PT P +S +
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSPRRARSSLT 217
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 268 WTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKL 390
W ++ HTS TL+ SP+ +S+ T+C+ + +
Sbjct: 480 WNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMM 520
>10_08_0406 - 17688069-17690643,17691065-17691132
Length = 880
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 110 DHPTLGRVPKMFHRGCR*RGLATDAA-DPYLATWLQYRAHGKKHNDAQSHQR 262
D P R ++FHR R RG A D A D W+ + ND Q H +
Sbjct: 789 DDPAARRGARLFHR-LRRRGPAFDKAWDELARFWVHLVVYLAPSNDVQGHAK 839
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -2
Query: 407 GTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGW 279
G +WS F +LN +S H+ V L+ W + W
Sbjct: 197 GNAENWSSQGDKDDFYNELNTISEARHKNLVKLEGWCCHINAW 239
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 541 MCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTD 419
+CT L I+ L+G+ +A+ V SGP P G T D
Sbjct: 330 ICTGLGIAPRSIGDLIGVVKAYTTRVGSGPFPTELLGKTGD 370
>02_03_0134 - 15596379-15597689
Length = 436
Score = 27.9 bits (59), Expect = 8.1
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = +1
Query: 145 SSWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLA 324
S W P ARNR S+ ++R A S + +K+ ++P + T +AT
Sbjct: 114 SVWPPALTARNRSSKDMNR-TAKSSSAMQKSNLSSRPGVDKMAASSAKQ---RTQKATPG 169
Query: 325 SCSPAET-SLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTP 447
+ + +T ++ SV T K V +P Q + P+ P
Sbjct: 170 ALAGGKTQAVPSVRAPGTTTKKTMGVANSVPSIQRTSIPSRP 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,651,121
Number of Sequences: 37544
Number of extensions: 491483
Number of successful extensions: 1368
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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