Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0020
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 232 2e-61
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 34 0.13
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 29 2.7
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 3.6
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1) 29 4.8
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 29 4.8
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 6.3
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 28 6.3
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 6.3
SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10) 28 8.3
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 232 bits (567), Expect = 2e-61
Identities = 108/151 (71%), Positives = 128/151 (84%)
Frame = +3
Query: 117 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL 296
Q LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGKNTM+RKAI+ HL+NNP LEKL
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60
Query: 297 LPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 476
LPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFF
Sbjct: 61 LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFF 120
Query: 477 QALSIPTKISKGTIEIINDVHILKPGDKVGA 569
QAL+IPTKI++GTIEIINDVH++K +K+ A
Sbjct: 121 QALAIPTKIARGTIEIINDVHLIKKDEKLKA 151
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 35.1 bits (77), Expect = 0.055
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +3
Query: 231 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 347
K T++RK +K HLDN P L K LP + G + + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -2
Query: 533 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 411
I+D NS + R K+LEERGLL+ +GV GG + ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +3
Query: 372 ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 545
E ++ +PA +P S+ TGL P S Q LS+ T + ++ D+
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128
Query: 546 KPGDK 560
PG K
Sbjct: 2129 TPGKK 2133
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = +1
Query: 148 SWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*C-AKPSKTTWTTIQPSRNCCHTSRATLA 324
S VP+T + + + P + + + T KP + + CC+ +A A
Sbjct: 580 SSVPLTQFQAQLQQQQPAQATPTNAATQDTDSAPCKPICLKFCVTLCPQKCCNKGKAAAA 639
Query: 325 SCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP----PTTPA 450
+ +P + + T T++ + P P C P P+ PA
Sbjct: 640 AAAPTKPPTAAPTTAAATQAAPAAMTCPQPACAPQSPMSCMPSCPA 685
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 439 WAGMTTDNGAMAPGRAGAWTLFSNSL 362
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
Length = 939
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -3
Query: 670 ISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL--MISIVPFEIL 497
+S + +VP+SY TRP NG+ + + A E P+L+ F+ L +I + I
Sbjct: 162 LSVSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFEDDRHLQGVIQSIRDAIS 218
Query: 496 VGIERAWK 473
+ AWK
Sbjct: 219 NAFDMAWK 226
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 565 PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 449
P P F+ C +L+ ++ ++ + RAW+KEV S R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +3
Query: 459 EKTSFFQALSIP---TKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSY-GLV 626
E S Q+ + P T++S G+ + V +KP + G + T ++ N+S S
Sbjct: 2269 EPVSIMQSQNTPPVETELSAGSRTSLPKVSAIKPSVEYGQLDDTEIHETNLSASSIPSEK 2328
Query: 627 VKQVYDSGTIFAPEILDI 680
VK ++ S T+ P L I
Sbjct: 2329 VKSLFMSSTLDTPSSLSI 2346
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 376 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 266
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 28.3 bits (60), Expect = 6.3
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Frame = -3
Query: 691 SSGLMSRISGAKIVPESY-TCLTTRPYENGEMFNMLRRVASEAPTLSP---GFKMCTSLM 524
S L GA P + T T+ PY + AS +PT+SP C+++
Sbjct: 1201 SQPLFITTPGALFTPLPHETSATSPPYTSASPVPTTTPSASSSPTISPIGSSLAQCSTVD 1260
Query: 523 ISIVPFEILVGIERAWKKEVFS------GPRPVLWAGMTTDNGAMAP 401
P +G ERA ++ S G P++ G NG P
Sbjct: 1261 SMDKPSLRPIGTERACRRATASPLPSMPGISPLIGGGKLVGNGDSVP 1307
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 131 VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKK 235
VPKMFH RG+ T+A P + T +L+ R G++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRR 3891
>SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 604 LHSHMVLLLSRYMILELFLHLKFWTSNQKIS 696
L S +++++ RY+ + LH + W S +K+S
Sbjct: 145 LLSMLLMMVDRYIAIAWGLHYRIWKSQRKVS 175
>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
Length = 543
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -3
Query: 574 SEAPTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMT 425
S P L P S I+P EILVG+ER +K V G L MT
Sbjct: 258 SNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,377,359
Number of Sequences: 59808
Number of extensions: 549218
Number of successful extensions: 1509
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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