Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0019
(517 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 29 0.55
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 28 0.72
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 28 0.95
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 27 2.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 2.9
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.8
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.8
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 5.1
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 5.1
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 28.7 bits (61), Expect = 0.55
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRP 306
PPP P+ + PP +Q +PP Y P
Sbjct: 209 PPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPP 242
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 28.3 bits (60), Expect = 0.72
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 199 QRPPPNHEQIPS-EPNQEPPNYGEQDRFPPNHNGYRPPNG 315
QR PP+ QIP +P Q+ P PPN G P+G
Sbjct: 346 QRLPPSSIQIPPPKPMQKFPANAASSESPPNATGNFLPSG 385
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 27.9 bits (59), Expect = 0.95
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 188 PNCPCTLKLKACDSPPRTAPCTCLCTS*APLRIPVISPPLHSLT 57
PN P +L SP +T+P T AP +P +P SLT
Sbjct: 538 PNQPSRPRLPRVASPLKTSPVKLAVTPQAPSPLPSSNPSQASLT 581
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 220 EQIPSEPNQEPPNYGEQDRFPPNHN 294
+ PS PN++ P E DRF P+ +
Sbjct: 57 KSFPSSPNKKRPRTNEGDRFIPSRD 81
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +1
Query: 196 QQRPPPNHEQ--IPSEPNQ-EPPNYGEQDRFPPN 288
QQ P P E+ +PSEP+Q +P Y + P N
Sbjct: 497 QQAPSPKEEERPLPSEPSQNQPAEYRDTPDTPRN 530
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 101 PLRIPVISPPLHSLTTNRTKITDFFSHGY 15
PL +P+ P++SL + D F H Y
Sbjct: 60 PLNVPLFELPVNSLELQNSVSNDMFKHVY 88
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 220 EQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 315
E+ PNQ P N+ +R P +N YR NG
Sbjct: 285 EEYGFNPNQ-PSNFRSPNRAPSTNNRYRGWNG 315
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 238 PNQEPPNYGEQDRFPPNHNGYRPPNGQ 318
P+ PPN G PN++G + PN Q
Sbjct: 81 PSGPPPNTGANSYGNPNYSGPQLPNTQ 107
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +1
Query: 109 DVHKQVQGAVLGGLSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQ--EPPNYGEQDRFP 282
D K + ++ S+ +N G F +P N + IP + + G RFP
Sbjct: 210 DSGKAKEQKIVSEQSKKYNMFEEG-FLAKLHKPGGNTQLIPERMKEHLQATGGGVVTRFP 268
Query: 283 PNHNGY 300
P NGY
Sbjct: 269 PEPNGY 274
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +1
Query: 157 AFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGY--RPPNGQNGY 327
A N N + +P P++ +PS PN G P +GY P Q GY
Sbjct: 102 AINNNFGYSYVGQSSQPVPSYNPLPSYNTASLPNAGIPAAMPGMPSGYPGTVPIPQGGY 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,841
Number of Sequences: 5004
Number of extensions: 35266
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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