Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0019
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1682 - 39130696-39131705,39132355-39132583 33 0.10
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 31 0.42
07_01_0231 - 1698244-1700154 31 0.73
02_05_0218 + 26860319-26862448 31 0.73
11_06_0610 - 25449085-25453284 30 0.96
02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202 30 0.96
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440... 30 1.3
09_02_0223 + 5977138-5977459,5979842-5980842 30 1.3
02_05_0380 + 28472494-28473090 30 1.3
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 1.7
11_01_0620 - 4964263-4965052,4965578-4965663,4966332-4966413,496... 29 2.2
07_03_1160 - 24430240-24431268 29 2.2
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 2.9
05_03_0088 - 8308587-8308649,8308682-8308738,8310403-8310501,831... 29 2.9
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 29 2.9
02_05_0591 - 30183105-30183869 29 2.9
02_04_0381 - 22497519-22497769,22498157-22498247 29 2.9
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601... 28 3.9
02_01_0302 - 2021221-2023305 28 3.9
08_02_1256 + 25645085-25645396 28 5.1
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 28 5.1
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 27 6.8
04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187... 27 6.8
02_05_0219 + 26870970-26873117 27 6.8
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 27 6.8
12_01_1058 - 10928128-10928163,10929082-10929199,10929391-109294... 27 8.9
11_02_0113 + 8453628-8453820,8453970-8454941,8455031-8455644 27 8.9
08_02_1084 - 24232968-24234779 27 8.9
07_01_0023 - 154119-154541,154697-154741,154875-154922,156104-15... 27 8.9
06_03_0056 - 16046535-16047309,16047625-16048784,16049233-160493... 27 8.9
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 27 8.9
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 27 8.9
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 27 8.9
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 33.5 bits (73), Expect = 0.10
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 196 QQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 309
Q PP +++ P+ N PP YG PP N Y PP
Sbjct: 242 QYTPPNSYQAPPTSYNHPPPPYGYNSPIPPT-NKYLPP 278
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 31.5 bits (68), Expect = 0.42
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 181 QFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
Q+G + Q PPP P P+ PP ++ P G PP Q Y
Sbjct: 12 QYGFHPQAPPPP----PQYPHHPPPYAAPLPQYAPYARGMPPPQAQQLY 56
>07_01_0231 - 1698244-1700154
Length = 636
Score = 30.7 bits (66), Expect = 0.73
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 145 GLSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNY 261
GLS A ++ + FG+N P + ++P P EPPNY
Sbjct: 250 GLSTAHHYVLGWSFGMNSPAPTIDSTKLPKLP--EPPNY 286
>02_05_0218 + 26860319-26862448
Length = 709
Score = 30.7 bits (66), Expect = 0.73
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 142 GGLSQAFNFNVHGQFGVNQQRPPPN---HEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
GG + F + + ++PPP+ HE I ++P P G Q +F NH +PPN
Sbjct: 205 GGGKASLGFGLFSPEATSLEQPPPSMLFHEGIDTKP----PLLGAQPQFLLNHYQPQPPN 260
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +1
Query: 196 QQRPPPNHEQIPSEP---NQEPPNYGEQDRFPPNHNGYRPPN 312
+++ PP+H S P EPP PP+H Y PP+
Sbjct: 944 EEKSPPSHTPESSSPPSEESEPPPSPTPKSSPPSHEEYVPPS 985
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +1
Query: 202 RPPPNHEQIPSEP---NQEPPNYGEQDRFPPNHNGYRPPN 312
+ PP+H S P EPP PP+H Y PP+
Sbjct: 896 KSPPSHTPESSSPPSKESEPPPTPTPKSSPPSHEEYVPPS 935
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 309
PP E PS P PP +++ PP H+ + P
Sbjct: 760 PPTPEEYTPSPPKSSPP----EEKSPPPHSPEKSP 790
>02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202
Length = 580
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 309
PPPN +P+ PN P N Q PP + PP
Sbjct: 101 PPPNQNNLPNIPNYNPYNVNHQ-YIPPFYYPPYPP 134
>09_04_0684 -
19442335-19442990,19443774-19443839,19443935-19444032,
19444787-19445157
Length = 396
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 178 GQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRP-PNGQNGYE 330
GQ V + PP H + P PPN G PPN+ + P P G Y+
Sbjct: 252 GQGPVPPRDAPPMHHAQGNVPPPPPPNAG-----PPNYQPHAPNPQGYTNYQ 298
>09_02_0223 + 5977138-5977459,5979842-5980842
Length = 440
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP-NGQNG 324
PPP +PS P+ PP+ E D PP+ +G P +G G
Sbjct: 382 PPPTMLMLPSPPSP-PPSDAEGDAPPPSGDGDEAPGSGAKG 421
>02_05_0380 + 28472494-28473090
Length = 198
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 212 GGGLC*FTPNCPCTLKLKACDSPPRTAPCTCLCTS 108
GGG+C P+C L+ C + PC C C S
Sbjct: 30 GGGVC---PHCLRDRLLRLCPNCAHVRPCPCTCAS 61
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 214 NHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 309
+H + PS P EPP PP H+ +PP
Sbjct: 188 HHAKPPSLPPAEPPVPSPSPEHPPRHSPSKPP 219
>11_01_0620 -
4964263-4965052,4965578-4965663,4966332-4966413,
4967052-4967156,4967600-4967772,4967988-4968101,
4973939-4974037,4974320-4974398,4975424-4975492,
4975955-4976061
Length = 567
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +1
Query: 124 VQGAVLGGLSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYR 303
+ + G S + N N +G G + + P Q P P YG++ ++ +G
Sbjct: 438 INPTAIPGFSSSSNANKYGDSGEDLPKAPWE-AQAPGSLPPPPARYGQRQQYFEQQHGL- 495
Query: 304 PPNGQNG 324
P+G NG
Sbjct: 496 -PSGNNG 501
>07_03_1160 - 24430240-24431268
Length = 342
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 202 RPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 309
+P PN IP++P Q PN + PP N PP
Sbjct: 217 QPNPNGPSIPNQPPQPIPNGPIKPDQPPQPNPDMPP 252
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 202 RPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 309
+P PN P +P Q PN + PP N PP
Sbjct: 273 QPNPNGPPKPDQPPQPNPNGPSKPDQPPRPNPDMPP 308
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +1
Query: 184 FGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 309
+GVN +PPP PS P PP PP P
Sbjct: 99 YGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAP 140
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 187 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 285
G QQ+ PP Q+ +P PP YG PP
Sbjct: 75 GPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPP 107
>05_03_0088 -
8308587-8308649,8308682-8308738,8310403-8310501,
8311501-8311620,8311715-8311837,8312416-8312471,
8315404-8315451,8315555-8315615
Length = 208
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +1
Query: 178 GQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNH---NGYRPPNGQNGYE 330
GQ G ++R PPNH P E + G + F P H N + G+N Y+
Sbjct: 6 GQLG-GRERRPPNHIYAAGAPTPELVSGGVRAVFLPQHVQVNHFIQSEGKNVYD 58
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 155 CDSPPRTAPCTCLCTS*APLRIPVISPPLH 66
C S P +AP T +S APL + PP H
Sbjct: 27 CSSGPASAPSTSTTSSSAPLPVAAPPPPHH 56
>02_05_0591 - 30183105-30183869
Length = 254
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 226 IPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 330
+P P+ P ++ PP+H Y PP G E
Sbjct: 175 VPPPPHPPPHHHAFHQLMPPHHGQYAPPYDMYGGE 209
>02_04_0381 - 22497519-22497769,22498157-22498247
Length = 113
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 214 NHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 330
+H+ +P+ PP++ + PP+H PP G E
Sbjct: 33 DHDGGDHDPSPSPPDHEDPSPSPPDHEDEPPPPSSPGKE 71
>11_01_0727 -
6010537-6010548,6011029-6011606,6011709-6011774,
6011867-6011964,6013238-6013608
Length = 374
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +1
Query: 187 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPP--NHNGYRPPNG 315
GV RPPP H PS ++ G PP N+ PP G
Sbjct: 185 GVITPRPPPVHYSKPSRTDRNRNYRGNYQNGPPQGNYQNSPPPYG 229
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
PP ++ IPS P P+ G P +GY+PP+GQ G
Sbjct: 568 PPGSYGPIPSTP----PSSGSP---PSPSSGYQPPSGQPG 600
>08_02_1256 + 25645085-25645396
Length = 103
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 196 QQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 285
Q PPP +PS P PP E+ PP
Sbjct: 60 QPPPPPPPPPLPSPPPPPPPQQQEEQSPPP 89
>07_03_0471 + 18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 85 TGILSGAHDVHKQVQGAVLGGLSQAFNF 168
TG G H H+Q +GG+ AFNF
Sbjct: 1073 TGGPIGGHLAHQQSSQQAMGGMGSAFNF 1100
>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGY--RPP 309
PP H PS P NY + PP +N Y +PP
Sbjct: 1175 PPGPHFSGPSVPPHHGNNYHQPPSVPPPNNAYHLQPP 1211
>04_01_0168 -
1874297-1874645,1874968-1875137,1875688-1875807,
1876750-1876812
Length = 233
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +1
Query: 241 NQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
NQ+PP Y EQ P H P GY
Sbjct: 203 NQQPPQYSEQ--LKPQHTSQHTPRHAAGY 229
>02_05_0219 + 26870970-26873117
Length = 715
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +1
Query: 82 ITGILS--GAHDVHKQVQGAVLGGLSQAFNFNVHGQFGVNQQRPPPN---HEQIPSEPNQ 246
++G+ S + H GA GG + F + + ++PPP HE I ++P
Sbjct: 191 LSGVASDLSSSGAHTATGGA--GGGKASLGFGLFSPEATSLEQPPPPMLFHEGIDTKP-- 246
Query: 247 EPPNYGEQDRFPPNHNGYRPPN 312
P G Q NH ++PPN
Sbjct: 247 --PLLGAQPPGLLNHYHHQPPN 266
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNH 291
PPPN++ P P+Y RFPP H
Sbjct: 92 PPPNYDN-PYAHEGSFPDYEHAGRFPPAH 119
>12_01_1058 -
10928128-10928163,10929082-10929199,10929391-10929482,
10929620-10929707,10930614-10930840
Length = 186
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 282 WESILLPIIWWFLIRFARYLFMVWWWS 202
WES+ + ++ WF+ R R + WWS
Sbjct: 112 WESVDVGLLAWFIRRQGRKGSLKVWWS 138
>11_02_0113 + 8453628-8453820,8453970-8454941,8455031-8455644
Length = 592
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 253 PNYGEQDRFPPNHNGYRPPNGQ 318
P EQ + N+NGYRP GQ
Sbjct: 224 PETREQAMYMGNNNGYRPQGGQ 245
>08_02_1084 - 24232968-24234779
Length = 603
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 193 NQQRPPPN-HEQIPSE--PNQEPPNYGEQDRFPPNHNGYRPP 309
+QQ PPP+ +P + P+Q+ P +Q + PP H+ PP
Sbjct: 56 SQQLPPPSLPPPLPQKQPPSQQLPPPPQQQQPPPQHSLPPPP 97
>07_01_0023 -
154119-154541,154697-154741,154875-154922,156104-156185,
156365-156444,156606-156677,156827-156921,157479-157515
Length = 293
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 211 PNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
P H+ +P+ P + P+ Q PP+ +G R P+G G+
Sbjct: 248 PRHK-LPASPRHKCPSSPRQP--PPHAHGPRMPDGTRGF 283
>06_03_0056 -
16046535-16047309,16047625-16048784,16049233-16049340,
16049487-16049672,16050342-16050398
Length = 761
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 83 ISPPLHSLTTNRTKITDFFSHGYY 12
+S P+ +RT T FFS+ YY
Sbjct: 391 VSSPMRETEESRTNSTQFFSNAYY 414
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 309
PPP PS P +PP+ Q PP PP
Sbjct: 82 PPPPPRNSPSPP--KPPSQAAQSPLPPTTTTTTPP 114
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 202 RPPPNHEQIPSEPNQEPPNYG 264
RPPP +Q P PP+YG
Sbjct: 62 RPPPQPQQQPRVETPPPPSYG 82
>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 285
+++RPPP P PN PP + QD PP
Sbjct: 960 SEKRPPPP----PPPPNVAPPPFTRQDIPPP 986
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,921,581
Number of Sequences: 37544
Number of extensions: 268483
Number of successful extensions: 1094
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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