Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0019
(517 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 37 0.009
SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 33 0.14
SB_34081| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 32 0.32
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.43
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 31 0.56
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98
SB_14279| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98
SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08) 30 0.98
SB_37079| Best HMM Match : Homeobox (HMM E-Value=1.2e-28) 30 1.3
SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_16879| Best HMM Match : Stig1 (HMM E-Value=1) 29 1.7
SB_47086| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23) 29 2.3
SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9) 29 2.3
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 29 2.3
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86) 28 4.0
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_43401| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_11360| Best HMM Match : PDZ (HMM E-Value=0) 28 4.0
SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20) 28 4.0
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 28 4.0
SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7) 28 4.0
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 28 4.0
SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009) 28 5.3
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42) 28 5.3
SB_23434| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 27 6.9
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0) 27 9.2
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 27 9.2
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 27 9.2
SB_9757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_233| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 27 9.2
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 27 9.2
SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15) 27 9.2
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 229 PSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 330
P+ +EPP GE D PP G PP G+ G E
Sbjct: 495 PAAEGEEPPPEGEGDDLPPEEGGEVPPEGEEGAE 528
>SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 35.5 bits (78), Expect = 0.026
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
PPP + S P Q+ YG PP GY PP GQ GY
Sbjct: 297 PPPGQQGYGSPPGQQ--GYGP----PPGQQGYGPPAGQQGY 331
Score = 34.7 bits (76), Expect = 0.046
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQE---PPNYGEQDRFPPNHNGYRPPNGQNGY 327
PPP + P Q+ PP + PP GY PP GQ GY
Sbjct: 279 PPPGQQGYGPPPGQQGYGPPPGQQGYGSPPGQQGYGPPPGQQGY 322
Score = 34.3 bits (75), Expect = 0.060
Identities = 22/55 (40%), Positives = 24/55 (43%)
Frame = +1
Query: 163 NFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
NFN+H + PP Q P P Q YG PP GY PP GQ GY
Sbjct: 213 NFNLH----IVGYGPPG---QQPGSPGQHQ-GYGTLPGPPPGQQGYGPPPGQQGY 259
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
PPP + P Q+ YG PP GY PP GQ GY
Sbjct: 243 PPPGQQGYGPPPGQQ--GYGA----PPGQQGYGPPLGQQGY 277
>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 515
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +1
Query: 142 GGLSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPN 288
G + Q FNV G + P NH P +P Q P +G D+F PN
Sbjct: 167 GHMFQPPGFNVQG----GNKPGPENHSGPPFKPGQRPYQHGGPDQFGPN 211
>SB_34081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -3
Query: 191 TPNCPCTLKL----KACDSPPRTAPCTCLCTS*APLRIPVISPPLHSLTT 54
TP C ++L CDSP R T C S P+R+ +PP HS+ T
Sbjct: 111 TPTCDSPMRLLHATPTCDSPMRLLHATPPCDS--PMRLLHATPPCHSMKT 158
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 31.9 bits (69), Expect = 0.32
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 181 QFGVNQQRPPPNHEQIPSEPNQEPPNYG--EQDRFPPNHNGYRPPN 312
Q+ NQQ P P H P + + P Y + + PP H+ + PN
Sbjct: 497 QYNQNQQVPHPQHPPPPYQRSASYPGYSPEQYQQVPPPHSQMQQPN 542
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 31.5 bits (68), Expect = 0.43
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 196 QQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
Q PP + + P P Q P +Q P + Y PP Q Y
Sbjct: 300 QSYPPTSQQSYPPTPQQSYPLTSQQSYLPTSQQSY-PPTSQQSY 342
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +1
Query: 196 QQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
Q PP + + P P Q P Q FPP P N Q G
Sbjct: 332 QSYPPTSQQSYPPSPQQSYPQTSIQQNFPPTQ---PPNNSQQG 371
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Frame = +1
Query: 121 QVQGAVLGG-----LSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 285
Q QGA+ G + + Q G + PP + Q+P+ P +G +P
Sbjct: 637 QYQGAMAGNNQPPTSTMQYQETTRQQMGTTRAYPPHPYAQVPAPCGNVQPQHGHPGMYPQ 696
Query: 286 NHNGYRP 306
+ G P
Sbjct: 697 HPQGSYP 703
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 31.1 bits (67), Expect = 0.56
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +1
Query: 178 GQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 309
G G NQ PPP H P +P P G + PP GY PP
Sbjct: 168 GYPGYNQ--PPPGHYPAPGQPGGYYPPPGGYQQPPP--GGYAPP 207
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
N + P + P PP +G PP++ G+ PPN
Sbjct: 260 NHEGDPYHGGPFNQAPPGFPPRWGPPPHMPPDYRGFPPPN 299
>SB_14279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 190 VNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRP 306
V + +P + IP+E NQ N E D F P G +P
Sbjct: 50 VKKFKPGYQYSSIPTEANQGHQNEEEDDMFDPRPKGLQP 88
>SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)
Length = 836
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 169 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
N+ N PPN Q + + P+ PPN+ + R P+ Y PPN
Sbjct: 140 NISQSVRANPHYSPPNISQSVRANPHYSPPNFRQSVRANPH---YSPPN 185
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 169 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
N+ N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 155 NISQSVRANPHYSPPNFRQSVRANPHYSPPNIRQSVRANPH---YSPPN 200
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 169 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
N+ N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 200 NISQSVRANPHYSPPNIRQSVRANPHYSPPNISQSVRANPH---YSPPN 245
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 169 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
N+ N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 185 NIRQSVRANPHYSPPNISQSVRANPHYSPPNIRQSVRANPH---YSPPN 230
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 193 NQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 133 NPHYSPPNISQSVRANPHYSPPNISQSVRANPH---YSPPN 170
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 193 NQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
N PPN Q + + P+ PPN + R P+ Y PPN
Sbjct: 178 NPHYSPPNIRQSVRANPHYSPPNISQSVRANPH---YSPPN 215
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 169 NVHGQFGVNQQRPPPNHEQ-IPSEPNQEPPNYGEQDRFPPNHN 294
N+ N PPN Q + + P+ PPN+ + R P+++
Sbjct: 215 NIRQSVRANPHYSPPNISQSVRANPHYSPPNFRQSVRANPHYS 257
>SB_37079| Best HMM Match : Homeobox (HMM E-Value=1.2e-28)
Length = 246
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 196 QQRP--PPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQN 321
Q +P PP + S P Q+PP R P + Y+PPN N
Sbjct: 139 QHKPATPPQSHYVNSNPWQQPP---VDMRMPMGRSNYQPPNMMN 179
>SB_984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +1
Query: 208 PPNHEQIPSEPN---QEPP-NYGEQDRFPPNHNGYRPPNGQN 321
PP Q P +P Q PP NY P G +PP GQN
Sbjct: 171 PPGVYQGPHQPPPYCQPPPGNYSGYGAMDPRQGGAQPPMGQN 212
>SB_16879| Best HMM Match : Stig1 (HMM E-Value=1)
Length = 232
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +1
Query: 208 PPNHEQIPSEPN---QEPP-NYGEQDRFPPNHNGYRPPNGQN 321
PP Q P +P Q PP NY P G +PP GQN
Sbjct: 171 PPGVYQGPHQPPPYCQPPPGNYSGYGAMDPRQGGAQPPMGQN 212
>SB_47086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 330
N R PP++ + + ++ PP+Y E PNHN R N E
Sbjct: 406 NLFRGPPSYHSVCLD-HELPPSYDEAVNLCPNHNPVRTDRTANASE 450
>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
Length = 1178
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Frame = +1
Query: 208 PPNHEQIPSEPNQEPPNYGEQDRFP---PNH-NGYRP 306
PP Q+PSEP P+ G P NH NGY P
Sbjct: 66 PPGRRQVPSEPWYHHPDSGYPSSSPTSKSNHYNGYLP 102
>SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Frame = +1
Query: 208 PPNHEQIPSEPNQEPPNYGEQDRFP---PNH-NGYRP 306
PP Q+PSEP P+ G P NH NGY P
Sbjct: 110 PPGRRQVPSEPWYHHPDSGYPSSSPTSKSNHYNGYLP 146
>SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9)
Length = 297
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 151 SQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEP-PNYGEQD 273
S F +G FG ++Q P N + S P+QE P + +QD
Sbjct: 131 SLCFTVTPNGYFGTSRQNPAYNADGCTSGPSQETGPVHNQQD 172
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 187 GVNQQRPPPNHEQIPSEPNQEPPNYG--EQDRFPP 285
G + Q PPP E +PS+ + PP YG Q+ PP
Sbjct: 636 GQSMQPPPPKTEGVPSQ--EYPPGYGVEGQESQPP 668
>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
Length = 809
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 181 QFGVNQQRPP-PNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
Q+ VN+Q+ P P +Q + N Y ++ FP H P G G
Sbjct: 571 QYQVNEQQGPMPQQQQPQGDMNCGSYQYNRRNSFPLYHRAMSQPAGAYG 619
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 214 NHEQIPSEPNQEPPNYGEQDRFPPNHNG 297
++E P +P QEPP + +P +H G
Sbjct: 449 SYESSPPDPTQEPPRHVASKSWPSDHLG 476
>SB_43401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 282 WESILLPIIWWFLIRFARYLFMVWWWSLLIHAK 184
W S LP+ W R A+++F+ WWS + +
Sbjct: 14 WTSKDLPMAWTSFKRHAQFMFV--WWSFAVEVR 44
>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
Length = 625
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 196 QQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 285
Q PPP E I + P+ P GE + PP
Sbjct: 122 QTPPPPTPEVIETAPSPSPGENGEVNHVPP 151
>SB_5670| Best HMM Match : Tsg101 (HMM E-Value=2.5e-20)
Length = 315
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 244 QEPPNYGEQDRF-PPNHNGYRPP 309
+EPP Y + + + PP GYRPP
Sbjct: 43 EEPPVYAKPNNYQPPPQPGYRPP 65
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 202 RPPPN--HEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
R PP+ H+ + SE ++E E D P N Y P NG
Sbjct: 321 RQPPSIPHDLVTSEQDRESKFLHEFDELPDIENAYTPLPSMNG 363
>SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7)
Length = 577
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 191 TPNCPCTLKL----KACDSPPRTAPCTCLCTS*APLRIPVISPPLHS 63
TP C ++L CDS R T C S P+R+P ++PP S
Sbjct: 85 TPPCDSPMRLLHVTPPCDSSMRLLHATPPCDS--PMRLPHVTPPCDS 129
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +1
Query: 202 RPPPNHEQIPSEPNQEPPNY----GEQDRFPPNHNGYRPP 309
R PP+H + PS + PP++ R+ P+H Y PP
Sbjct: 382 RYPPSHSRYPSSHPRYPPSHLRYPPSSLRYLPSHLRYPPP 421
>SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)
Length = 392
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 184 FGVNQQRPPPNH--EQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
FG++ RPP + + + + P PP R N +G PPN + G+
Sbjct: 340 FGMSPVRPPTHSMAQAMGAPPPPLPPMQPRAPRMDYNWSGQYPPNMRGGW 389
>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
Length = 1712
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 211 PNHEQIPSEPNQEPPNYGEQDRFPPNHNGYR 303
PN + I EP+++P G + P+H G R
Sbjct: 709 PNKDVIMDEPHRDPKQLGSRKHRDPDHLGSR 739
>SB_23434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -2
Query: 285 GWESILLPIIWWFLIRFARYLFMVWWWSL 199
GW +++ ++WW+ + + +VWWW L
Sbjct: 97 GWLNVV--VVWWWQLN----VVVVWWWRL 119
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +1
Query: 187 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 315
G N PPP S P+Q PP G PP G PP G
Sbjct: 927 GGNAPLPPPPPGG--SAPSQPPPPGGNAPPPPPPPGGSAPPPG 967
>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
Length = 662
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 178 GQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFP 282
GQ + QQ+ P NH+Q Q+PPN +Q +P
Sbjct: 292 GQMQLGQQQVP-NHQQSQHPGQQQPPNQ-QQPLYP 324
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 178 GQFGVNQQRPPPNHEQIPS--EPNQEPPNYGEQDRFPPNHNG 297
GQ NQQ+PP + P +PNQ+ P G+Q P + G
Sbjct: 251 GQQQSNQQQPPQQQQHGPGQMQPNQQHP--GQQVSRQPQNAG 290
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 309
N PPP + P+ P PPN +PP N PP
Sbjct: 171 NAPYPPPPYPPPPNPPYPPPPN----PPYPPPPNAPNPP 205
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQE-PPNYGEQDRFPPNHNGYRPPNGQN 321
PPP + P PN PP + PPN PPN N
Sbjct: 180 PPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPN 219
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Frame = +1
Query: 178 GQFGVNQQRPPPNHEQIPSEPNQE----PPNYGEQDRFPPNHNGYRPP 309
G GVN PP N+ P P PP + PP NG PP
Sbjct: 340 GGGGVNPPPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPP 387
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQN 321
PP N P P PP+ G+ R P G R NGQN
Sbjct: 399 PPTNGPPPPPPPTNGPPSEGKCGRKPA---GARIINGQN 434
>SB_52656| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1321
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 315
+Q +PPP ++ P +Q P G Q PP + +PP G
Sbjct: 878 SQPQPPPGNQVNPPMSSQPQPPPGNQVN-PPMSSQPQPPPG 917
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 315
+Q +PPP ++ P +Q P G Q PP + +PP G
Sbjct: 942 SQPQPPPGNQVNPPMSSQPQPPPGNQVN-PPMSSQPQPPPG 981
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 315
+Q +PPP ++ P +Q P G Q PP + +PP G
Sbjct: 958 SQPQPPPGNQVNPPMSSQPQPPPGNQVN-PPMSSQPQPPPG 997
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +1
Query: 250 PPNYGEQDRFPP-NHNGYR-PPNGQNG 324
PP+ G DR PP +H + PP+G +G
Sbjct: 287 PPDRGRHDRGPPHDHRDFHGPPDGPHG 313
>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1535
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 169 NVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 285
NVH +F + + PP ++ P+ P PN ++ PP
Sbjct: 1285 NVHQEFPIPPELKPPLPQRFPT-PTDIKPNVHQEFTIPP 1322
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 169 NVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPP 285
NVH +F + + PP ++ P+ P PN ++ PP
Sbjct: 1313 NVHQEFTIPPELKPPLPQEFPT-PTDIKPNVHQEFPIPP 1350
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFP--PNHNGYRPPN 312
+Q RPP + P EP + P G P P H RPP+
Sbjct: 321 DQGRPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPH 362
>SB_9757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 199 QRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYR 303
Q PP S P+Q PP+ + PP N ++
Sbjct: 12 QSPPSQSPPSQSPPSQSPPSQSPPSQSPPIMNNFQ 46
>SB_233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 199 QRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYR 303
Q PP S P+Q PP+ + PP N ++
Sbjct: 100 QSPPSQSPPSQSPPSQSPPSQSPPSQSPPIMNNFQ 134
>SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1301
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +1
Query: 184 FGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRF-PPNHNGYRPPNGQNG 324
F Q+ PP +Q+ S + +YG+ F P Y +G G
Sbjct: 761 FSSAQKASPPEQKQLKSTETSDSDDYGDFSNFETPTKESYNKSDGCTG 808
>SB_48450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 206 HHQTMNRYRANLIKNHQIMGSKIDSH 283
HHQT R+ +++I++HQ I H
Sbjct: 58 HHQTFIRHSSDIIRHHQTSSDIIRHH 83
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFP--PNHNGYRPPN 312
+Q RPP + P EP + P G P P H RPP+
Sbjct: 87 DQGRPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPH 128
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +1
Query: 187 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
GV P P IP P N + +P N N P NG GY
Sbjct: 195 GVLPPPPAPPGALIPPPPAPPTFNNNQNMGYPSNGNMGYPSNGNMGY 241
>SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)
Length = 490
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 164 LKACDSPPRTAPCTCLCTS*APLRIPV 84
+K C++PP+ C C + P + PV
Sbjct: 217 IKRCNTPPKKLTIKCACPTTQPTKSPV 243
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,393,258
Number of Sequences: 59808
Number of extensions: 282903
Number of successful extensions: 1073
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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