Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0019
(517 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39740.1 68415.m04880 expressed protein 34 0.065
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi... 33 0.15
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 32 0.26
At4g19590.1 68417.m02879 DNAJ heat shock N-terminal domain-conta... 32 0.26
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 31 0.35
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 31 0.35
At1g12810.1 68414.m01488 proline-rich family protein contains pr... 31 0.46
At2g37780.1 68415.m04639 DC1 domain-containing protein contains ... 31 0.61
At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1) c... 30 0.80
At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1) c... 30 0.80
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related 30 0.80
At4g03120.1 68417.m00425 proline-rich family protein similar to ... 30 0.80
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 30 0.80
At4g08013.1 68417.m01283 hypothetical protein low similarity to ... 30 1.1
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 1.4
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 29 1.9
At3g16510.1 68416.m02107 C2 domain-containing protein contains s... 29 1.9
At2g18470.1 68415.m02151 protein kinase family protein contains ... 29 1.9
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 29 2.5
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 29 2.5
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 29 2.5
At5g59170.1 68418.m07416 proline-rich family protein contains pr... 28 3.2
At4g25520.1 68417.m03680 transcriptional co-regulator family pro... 28 3.2
At3g30520.1 68416.m03863 hypothetical protein 28 3.2
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 28 3.2
At5g56250.2 68418.m07020 expressed protein 28 4.3
At5g56250.1 68418.m07019 expressed protein 28 4.3
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 28 4.3
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 28 4.3
At4g17060.1 68417.m02572 expressed protein 28 4.3
At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 4.3
At3g14595.1 68416.m01848 expressed protein 28 4.3
At2g23440.1 68415.m02798 expressed protein 28 4.3
At5g18700.1 68418.m02219 protein kinase-related contains protein... 27 5.7
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 27 5.7
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 27 5.7
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 27 5.7
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 27 5.7
At1g75240.1 68414.m08741 zinc finger homeobox family protein / Z... 27 5.7
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 27 5.7
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 27 5.7
At1g03530.1 68414.m00334 expressed protein similar to hypothetic... 27 5.7
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 27 7.5
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 27 7.5
At3g22350.1 68416.m02822 F-box family protein similar to F-box p... 27 7.5
At2g45490.1 68415.m05658 protein kinase, putative contains prote... 27 7.5
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 27 7.5
At1g50150.1 68414.m05624 hypothetical protein similar to hypothe... 27 7.5
At1g23540.1 68414.m02960 protein kinase family protein contains ... 27 7.5
At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-contain... 27 9.9
At4g23040.1 68417.m03322 UBX domain-containing protein similar t... 27 9.9
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family... 27 9.9
At2g29380.1 68415.m03569 protein phosphatase 2C, putative / PP2C... 27 9.9
At2g11405.1 68415.m01224 hypothetical protein 27 9.9
At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH) domain... 27 9.9
At1g53260.1 68414.m06035 hypothetical protein low similarity to ... 27 9.9
>At2g39740.1 68415.m04880 expressed protein
Length = 474
Score = 33.9 bits (74), Expect = 0.065
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = +1
Query: 55 VVSECNGGLITGILSGAHDVHKQVQGAVLGGLSQAFNF----NVHGQFGVNQQRPPPNHE 222
+VSECN I GIL+G H + L A N+HGQ Q+ N
Sbjct: 294 LVSECNRNSIIGILTGQHIQESLYRTISLPSQHHANGMHNVRNLHGQARPQNQQMQQNWS 353
Query: 223 QIPSEPNQEPPNYGEQDRFPPNHN 294
Q + PN PP++ + P N
Sbjct: 354 QSYNTPN--PPHWPPLTQSRPQQN 375
>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 579
Score = 32.7 bits (71), Expect = 0.15
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +1
Query: 97 SGAHDVHKQVQGAVLGGLSQAF---NFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGE 267
+ A+D H+ Q + + +F+ Q NQ R P + Q ++ + P YG
Sbjct: 53 AAANDYHQNPQSGSPSQHQRPYPPQSFDSQNQTNTNQ-RVPQSPNQWSTQHGGQIPQYGG 111
Query: 268 QDRFPPNHNGYRPP-NGQN 321
Q+ P H G RPP GQN
Sbjct: 112 QN---PQHGGQRPPYGGQN 127
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 31.9 bits (69), Expect = 0.26
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Frame = +1
Query: 196 QQRPPPNHEQIPSEPNQEPPNYGEQDR---FPP---NHNGYRPPNGQNG 324
Q PPP + P P PP YG Q R PP G PP+G G
Sbjct: 170 QGGPPPPYGMRPPYPGPPPPQYGGQQRPMMIPPPGGMMRGPPPPHGMQG 218
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = +1
Query: 187 GVNQQRPPPNHEQ--IPSEPNQEPPNYGEQDRFPPNHNGY--RPPNGQN 321
G+ + PPP+ Q PS P PP G F P H G PPN N
Sbjct: 205 GMMRGPPPPHGMQGPPPSRPGMPPP--GGAPMFAPPHPGMPPAPPNHHN 251
>At4g19590.1 68417.m02879 DNAJ heat shock N-terminal
domain-containing protein protein YJL162c, Saccharomyces
cerevisiae, PIR2:S56945; contains Pfam PF00226: DnaJ
domain;
Length = 345
Score = 31.9 bits (69), Expect = 0.26
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
NQQ+ PP+ ++ P ++PPN +Q P + +PPN
Sbjct: 149 NQQKQPPDQQKQPPNQPRQPPNQQKQ----PQNEPKQPPN 184
Score = 31.9 bits (69), Expect = 0.26
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPN 288
NQ R PPN ++ P ++PPN Q + PPN
Sbjct: 163 NQPRQPPNQQKQPQNEPKQPPN---QPKQPPN 191
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 193 NQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPN 288
NQ + PN ++ P + ++PPN Q R PPN
Sbjct: 142 NQPKQQPNQQKQPPDQQKQPPN---QPRQPPN 170
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 31.5 bits (68), Expect = 0.35
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPN 312
PPP ++ PS P+ PP + PP+H+ P N
Sbjct: 135 PPPAPKKSPSTPSLPPPTPKKSPPPPPSHHSSSPSN 170
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 315
PPP+H P + PP + PP HN +PP G
Sbjct: 619 PPPSHSPPPPVYSPPPPTFSP----PPTHNTNQPPMG 651
>At1g12810.1 68414.m01488 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 129
Score = 31.1 bits (67), Expect = 0.46
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +1
Query: 187 GVNQQRPPPNHEQIPSEPNQ-EPPNYGEQDRFPPNHNGYRPPNG---QNGYE 330
G PPP + P P PP++ E P + GY PP+ + GY+
Sbjct: 15 GYQSHYPPPGYPSAPPPPGYPSPPSHHEGYPPPQPYGGYPPPSSRPYEGGYQ 66
>At2g37780.1 68415.m04639 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 286
Score = 30.7 bits (66), Expect = 0.61
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = +1
Query: 190 VNQQRPPPNHEQIPSEPNQEP-------PNYGEQDRFPPNHNGYRPPNGQNGY 327
V +QR H PS P+Q P+ G+ + +PP GY+P N QN Y
Sbjct: 121 VTKQRSLHGHAGQPSPPHQYGQGIPYGYPHMGQPEPYPPQGGGYQPQN-QNYY 172
>At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1)
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH1 (SUVH1) GI:13517742
Length = 670
Score = 30.3 bits (65), Expect = 0.80
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 190 VNQQRPPPNHEQIPSEP---NQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
+NQ + PP H+Q + P Q+PP + + +R P+ NG
Sbjct: 67 LNQAQYPPQHQQPQNPPPVYQQQPPQHASEPSLVTPLRSFRSPDVSNG 114
>At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1)
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH1 (SUVH1) GI:13517742
Length = 670
Score = 30.3 bits (65), Expect = 0.80
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 190 VNQQRPPPNHEQIPSEP---NQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
+NQ + PP H+Q + P Q+PP + + +R P+ NG
Sbjct: 67 LNQAQYPPQHQQPQNPPPVYQQQPPQHASEPSLVTPLRSFRSPDVSNG 114
>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
Length = 1069
Score = 30.3 bits (65), Expect = 0.80
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 202 RPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNG 315
RPPP Q P Q+ P+YG R P + PP G
Sbjct: 56 RPPPPFGQSPQPFPQQSPSYGAPQRGPSPMSRPGPPAG 93
>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
small nuclear ribonucleoprotein C; contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 207
Score = 30.3 bits (65), Expect = 0.80
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +1
Query: 208 PPNHEQIPSEPNQEPPNYGEQDRFPPNH-NGYRPPNG 315
PP IP + PPNY PP H N PP+G
Sbjct: 150 PPGMAPIPGQGGGPPPNYNGLPPPPPYHTNPAAPPSG 186
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 30.3 bits (65), Expect = 0.80
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 175 HGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNG 297
HG G +PPP+H + +PP +G + PP+H G
Sbjct: 43 HGGGGGGGSKPPPHHG---GKGGGKPPPHGGKGGGPPHHGG 80
>At4g08013.1 68417.m01283 hypothetical protein low similarity to
SCARECROW [Zea mays] GI:10178637
Length = 113
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFP-PNHNGYRPPNGQ 318
PPP E+ P E P EQ P PN Y P+ Q
Sbjct: 57 PPPRSEEAQFNPPPEAPLNQEQSESPNPNSQAYTHPSSQ 95
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +1
Query: 196 QQRPPPNHEQIPSEPNQEPPNYGEQ-DRFPPNHNGYRPPNGQ 318
Q PPP+ PS P PP+ PP+ + PP+ Q
Sbjct: 27 QSSPPPSDSSSPSPPAPPPPDDSSNGSPQPPSSDSQSPPSPQ 68
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Frame = +1
Query: 205 PPPNHEQ--IPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
PP + Q P P PP +PP GY P G GY
Sbjct: 28 PPAGYPQQGYPPPPGAYPPAGYPPGAYPPAPGGYPPAPGYGGY 70
>At3g16510.1 68416.m02107 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 360
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 330
PPP PS N PP Y PP H Y PP G + ++
Sbjct: 244 PPP-----PSASNLYPPPYYSTS--PPQHQSYPPPPGHSFHQ 278
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGY-RPPNGQNGY 327
PPP H ++P+Q +G P N +GY PP GY
Sbjct: 270 PPPGHSFHQTQPSQS--FHGFAPSSPQNQHGYGYPPPTSPGY 309
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +1
Query: 187 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNH--NGYRPPNGQNG 324
G + PPP+ P+ PPN PP+ G R G NG
Sbjct: 43 GDSSSSPPPDSTSPPAPQAPNPPNSSNNSPSPPSQGGGGERGNGGNNG 90
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +1
Query: 187 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 330
G N + PP + P P ++PP++ P PP + Y+
Sbjct: 350 GYNPEEPPYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYD 397
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 199 QRPPPNHEQIPSEPNQEPPNYGEQDRFPPN 288
Q+PPP + PS N E P Y +Q +PPN
Sbjct: 339 QQPPPQLQH-PSGYNPEEPPYPQQS-YPPN 366
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +1
Query: 181 QFGVNQQR--PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
QF Q+ PPP+H P P PP Y P+ Y+ P Q Y
Sbjct: 278 QFSSQQEPYCPPPSH---PQPPPSNPPPYQAPQTQTPHQPSYQSPPQQPQY 325
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = +1
Query: 205 PPPNHE---QIPSEPN-QEPPNYGEQDRFPPNHNGYRP 306
PPP Q P +P+ Q PP + + PP +GY P
Sbjct: 300 PPPYQAPQTQTPHQPSYQSPPQQPQYPQQPPPSSGYNP 337
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 142 GGLSQAFNFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNY 261
G S ++ HG + +Q PPP++ P Q+ P Y
Sbjct: 384 GASSSSYTMPPHGHYPQHQPYPPPSYGGYMQPPYQQYPPY 423
>At5g59170.1 68418.m07416 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 288
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 196 QQRPPPNHEQIPSEPNQEP-PNYGEQDRFPPNHNGYRPP 309
+Q PPP + P E P Y Q+++PP Y PP
Sbjct: 144 EQYPPPIKKYPPPEHYPPPIKKYPPQEQYPPPIKKYPPP 182
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +1
Query: 196 QQRPPPNHEQIPSEPNQEP-PNYGEQDRFPPNHNGYRPP 309
+Q PPP + P E P Y +++PP Y PP
Sbjct: 118 EQYPPPIKKYPPPEQYSPPFKKYPPPEQYPPPIKKYPPP 156
>At4g25520.1 68417.m03680 transcriptional co-regulator family
protein contains similarity to GP|18033922|gb|AAL57277
SEUSS transcriptional co-regulator [Arabidopsis
thaliana]
Length = 748
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 163 NFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPN 258
N N Q G + Q P PN Q PS +Q+ N
Sbjct: 578 NSNTGKQEGFSSQNPTPNSNQSPSSSSQQRHN 609
>At3g30520.1 68416.m03863 hypothetical protein
Length = 397
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +1
Query: 202 RPPPNHEQIPSEPN----QEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
R PPN Q + PN + PPN PPN +G P N Q G+
Sbjct: 296 RTPPNVAQWGTPPNVAQCRTPPNAPHWGT-PPNAHGTTPTNVQYGF 340
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
PP + P P+ P NY +P + +RPPN GY
Sbjct: 411 PPQWGSRGPHGPHSMPYNYHHGGPYPSQGSHFRPPN-SGGY 450
>At5g56250.2 68418.m07020 expressed protein
Length = 811
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 190 VNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
V QR P+H + +P + + + + P+ N PP NGY
Sbjct: 755 VINQREEPSHNESSPKPTSQFLDLSKTQQASPSVNLLHPPYSGNGY 800
>At5g56250.1 68418.m07019 expressed protein
Length = 811
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 190 VNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
V QR P+H + +P + + + + P+ N PP NGY
Sbjct: 755 VINQREEPSHNESSPKPTSQFLDLSKTQQASPSVNLLHPPYSGNGY 800
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 202 RPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYR----PPNGQNG 324
RPPP +Q P PP YG++ PP R PP+G G
Sbjct: 189 RPPP--QQFSGPP---PPQYGQRPMIPPPGGMMRGPPPPPHGMQG 228
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 202 RPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYR----PPNGQNG 324
RPPP +Q P PP YG++ PP R PP+G G
Sbjct: 189 RPPP--QQFSGPP---PPQYGQRPMIPPPGGMMRGPPPPPHGMQG 228
>At4g17060.1 68417.m02572 expressed protein
Length = 310
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 163 NFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
NF HG N +P PN Q ++ + E++ F P R + NGY
Sbjct: 146 NFASHGFKPKNFSKPEPNFSQDLDYDDEFDDDRAEREGFNPRIQSSRSSSRVNGY 200
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +1
Query: 211 PNHEQIPSEPNQEPPN--YGEQDRFPPNHNGYRPPNGQNG 324
P++ + P PNQ PPN G R P N P + +G
Sbjct: 96 PSNPRSPPSPNQGPPNTPSGSTPRTPSNTKPSPPSDSSDG 135
>At3g14595.1 68416.m01848 expressed protein
Length = 132
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 193 NQQRPPPNHEQIPS-EPNQEPPNYGEQDRFPPNHNGY 300
+QQ+PPP + + + P Q+PP G P GY
Sbjct: 18 HQQQPPPPFQGVSNYPPQQQPPATGYPQPAQPYAQGY 54
>At2g23440.1 68415.m02798 expressed protein
Length = 82
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 229 PSEPNQEPPNYGEQDRFPPNHNGYRPPNGQN 321
P+EP + PP++G D F P G+ P G +
Sbjct: 50 PTEPLESPPSHG-VDTFRPTEPGHSPGIGHS 79
>At5g18700.1 68418.m02219 protein kinase-related contains protein
kinase domain, INTERPRO:IPR000719
Length = 1366
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 187 GVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 330
G+N + P E+ PN+ PP Y E+DR + G G+E
Sbjct: 273 GINTK--PCLSERNGDRPNKTPPKYREKDRKGGSKQNENSIQGSKGHE 318
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
PPP++ Q P PP Y Q P+++ PP+ G
Sbjct: 48 PPPSYAQPPEYTQPPPPLYSTQPYSAPSYSA--PPSQSYG 85
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
PPP++ Q P PP Y Q P+++ PP+ G
Sbjct: 48 PPPSYAQPPEYTQPPPPLYSTQPYSAPSYSA--PPSQSYG 85
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
PPP++ Q P PP Y Q P+++ PP+ G
Sbjct: 48 PPPSYAQPPEYTQPPPPLYSTQPYSAPSYSA--PPSQSYG 85
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
PPP++ Q P PP Y Q P+++ PP+ G
Sbjct: 48 PPPSYAQPPEYTQPPPPLYSTQPYSAPSYSA--PPSQSYG 85
>At1g75240.1 68414.m08741 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 309
Score = 27.5 bits (58), Expect = 5.7
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Frame = +1
Query: 76 GLITGILSGAHDVHKQVQGAVLGGL--SQAFNFNVHGQFGVNQ------QRPPP-----N 216
G I + A D H+ + G+ S + + H + NQ +RPPP N
Sbjct: 105 GTIEALRCAACDCHRNFHRKEMDGVGSSDLISHHRHHHYHHNQYGGGGGRRPPPPNMMLN 164
Query: 217 HEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 309
+P PN +P ++ + PP G P
Sbjct: 165 PLMLPPPPNYQPIHHHKYGMSPPGGGGMVTP 195
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Frame = +1
Query: 196 QQRPPPNHEQIPSE----PNQEPPNYGEQDRFPP 285
Q PPP +EQ PS P+ PP Y PP
Sbjct: 576 QSPPPPKYEQTPSPREYYPSPSPPYYQYTSSPPP 609
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPP 309
PPP + S P PP Y PP Y PP
Sbjct: 608 PPPTYYATQSPPPPPPPTYYAVQSPPPPPPVYYPP 642
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 193 NQQRPPPNHEQIPSEPNQE-PPNYGEQDRFPPNHNGYRPP 309
+Q PPP + +PS Q+ PPN+ Q P H Y PP
Sbjct: 389 HQSYPPPPYGYMPSPYQQQYPPNHHHQPS-PMQH--YAPP 425
>At1g03530.1 68414.m00334 expressed protein similar to hypothetical
protein GB:O14360
Length = 797
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 232 SEPNQEPPNYGEQDRFPPNHNGYRP-PNGQNGYE 330
S+P P + D FPPN+ +RP N QN Y+
Sbjct: 553 SDPQMGGPR-PQMDGFPPNNAAWRPQSNQQNPYQ 585
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +1
Query: 181 QFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNGY 327
Q G+N Q + PS Q PN G +P G+ P GY
Sbjct: 638 QGGMNPQMSQSHFMGAPSGVFQGQPNSGGPQMYPQGRGGFNRPQMIPGY 686
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +1
Query: 181 QFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQ 318
Q G Q P + P P PP Y Q PP H G PP +
Sbjct: 536 QQGYGQGYPAQGYPP-PQYPQGHPPQYPYQGP-PPPHYGQAPPKNK 579
>At3g22350.1 68416.m02822 F-box family protein similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; contains Pfam PF00646: F-box domain; contains
TIGRFAM TIGR01640 : F-box protein interaction domain
Length = 378
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -2
Query: 252 WFLIRFARYLFMVWWWSLLIHAKLSMYVEV 163
W+L RF+ WWW I+ + V++
Sbjct: 348 WWLCRFSEKFTKKWWWFPFIYNYVPSLVQI 377
>At2g45490.1 68415.m05658 protein kinase, putative contains protein
kinase domain, Pfam:PF00069; similar to protein kinase
p46XlEg22 [Xenopus laevis] gi|609280|emb|CAA78914
Length = 288
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 46 VLLVVSECNGGLITGILSGAHDVHKQVQGAVLGGLSQAFNFNVHGQFGVNQQRPPPN 216
+ L++ +GG + G+L + +Q + LSQA + HG+ +++ P N
Sbjct: 95 IFLILEYAHGGELYGVLKQNGHLTEQQAATYIASLSQALAY-CHGKCVIHRDIKPEN 150
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +1
Query: 202 RPPPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
+PPP Q+P P PP + PP PP G G
Sbjct: 707 KPPP--VQVPPTPTYSPPIKPPPVQVPPTPTTPSPPQGGYG 745
>At1g50150.1 68414.m05624 hypothetical protein similar to
hypothetical protein GB:AAD50048 GI:5734783 from
[Arabidopsis thaliana]
Length = 358
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 163 NFNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDR 276
+F+ H Q GV Q N+E+ SE +E P +++R
Sbjct: 98 HFDSHAQLGVQDQIEWLNNEKRASESRKESPFLNKRER 135
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQE-----PPNYGEQDRFPPNHNGYRPP 309
PPP + PS P PPN + PP+ + PP
Sbjct: 95 PPPTSNESPSPPEDSETPPAPPNESNDNNPPPSQDLQSPP 134
>At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-containing
protein-related / RhoGAP domain-containing protein
contains Pfam domain, PF00620: RhoGAP domain
Length = 902
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 208 PPNHEQIPSEPNQEPPNYGEQDRFPPNHNGYRPPNGQNG 324
PP H Q + Q+PP EQ++ P PP Q+G
Sbjct: 12 PPPHVQPNQQQQQQPPIANEQEQEPHGDTCSIPP-AQSG 49
>At4g23040.1 68417.m03322 UBX domain-containing protein similar to
Ara4-interacting protein [Arabidopsis thaliana]
GI:13160609; contains Pfam profile PF00789: UBX domain
Length = 525
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 88 GILSGAHDVHKQVQGAVLGGLSQAFNFNVHGQFGVNQQRPP 210
GI S HD ++ A+ GG+S++ + + QRPP
Sbjct: 321 GISSEEHDEAIMLEAAMFGGISESEYGVPYAHYPQRTQRPP 361
>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
protein similar to Mrs16p (GI:2737884) [Saccharomyces
cerevisiae]; weak similarity to ataxin-2 related protein
(GI:1679686) [Homo sapiens]
Length = 595
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Frame = +1
Query: 205 PPPNHEQIPSEPNQEPPNY------GEQDRFPPNHNGYRPPNGQNGY 327
P P+H + P P NY G Q + + Y PNGQ Y
Sbjct: 505 PGPSHVPVQQMPGMPPVNYGLPPYPGNQPQMMYHPQAYYHPNGQPQY 551
>At2g29380.1 68415.m03569 protein phosphatase 2C, putative / PP2C,
putative contains PF00481: Protein phosphatase 2C
domain; similar to protein phpsphatase 2C (PP2C)
(GI:7768151) [Fagus sylvatica].
Length = 362
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 191 TPNCPCTLKLKACDSPPRTA 132
T NC C L+ ACDS TA
Sbjct: 174 TANCKCDLQTPACDSVGSTA 193
>At2g11405.1 68415.m01224 hypothetical protein
Length = 115
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = -2
Query: 261 IIWWFLIR---FARYLFMVWWWS 202
++WW LI F ++F++WW S
Sbjct: 15 LLWWALIGERGFELFIFLLWWLS 37
>At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]
Length = 571
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Frame = +1
Query: 103 AHDVHKQVQGAVLGGLSQAFN--FNVHGQFGVNQQRPPPNHEQIPSEPNQEPPNYGEQDR 276
+HD G QA N F + Q +Q +P H+ P N P +G+
Sbjct: 481 SHDPFASSNGTAPPPQQQAVNNPFGAYQQTYQHQPQPTYQHQSNPPTNNSNP--FGDFGE 538
Query: 277 FPPNHNGYRP 306
FP N +P
Sbjct: 539 FPVNPVSQQP 548
>At1g53260.1 68414.m06035 hypothetical protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 358
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 205 PPPNHEQIPS-EPNQEPPNYGEQDRFPPNHNGYRPPNGQNGYE 330
PPP+ P+ P+ +PPN + R PP PPN Y+
Sbjct: 205 PPPHIGNNPNMPPHIQPPNMNQNYRGPP-----PPPNMNQNYQ 242
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,148,872
Number of Sequences: 28952
Number of extensions: 208598
Number of successful extensions: 892
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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