Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0017
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    28   0.51 
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   3.6  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    25   3.6  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   4.7  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   4.7  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   6.2  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    24   8.2  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    24   8.2  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 233 EGLMWILVDKLPRFLYKTLDPNEVNYSIYSISAKDAIAGTACE 361
           EG   I  D+L  FL K L P  +    YS+ +K +   + CE
Sbjct: 35  EGPKQISEDQLSNFLCKILKPTNLTPQTYSLESKSSNLVSDCE 77


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 58  AGLGQFL*SQYSSVVLWPGKPGWGGML 138
           AGLGQ   +      +W GKPG+ G L
Sbjct: 74  AGLGQMAETVRRFSKVWGGKPGYEGYL 100


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 379 VCIQYVFACCSCNCIFCTNTVNAIVHFIGIEG 284
           V +QY+    + NCIFC    N  ++   IEG
Sbjct: 167 VALQYI---PTMNCIFCAQKKNIPINVCNIEG 195


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 152  PYTPENNVLIFSDPKLYEFPNDLKIDDEGLMWILVDKLPRFLYKTLDPNEVNYSI 316
            PY P   V +  +  L  FP+DL + D     + V +LP      L  N V+ S+
Sbjct: 1838 PYIPLECVQL-RNMVLSAFPSDLHLPDPFAQGLKVGRLPEVTRAPLISNSVSASL 1891


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 365 CIRMLFLQLHL-LH*YCKCYSSLHWDRGSCTGTV 267
           C+ ++FLQ+HL +H Y    SS+ +       TV
Sbjct: 499 CLHLIFLQIHLYVHRYAASISSVPFSHVKSPPTV 532


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 416 LNETNKYYTKLICMYTVCIRMLFLQLHL 333
           LN  NKY    +C+Y V    LFL + L
Sbjct: 367 LNVANKYLPNSVCIYHVPRAGLFLWVEL 394


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 257 DKLPRFLYKTLDPNEVNYSIYSISAKDAIAGTACEYI 367
           D LP+F+++T+       S  S++A +       EYI
Sbjct: 443 DSLPQFVHQTMTQTNFQESSPSVAADETRVHNVDEYI 479


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 32  LLGDRGQGTQASASFYDPNTQVLFYGQVNR-DGVGCWNSNKPYTPENNVLIFSDPK 196
           LL  R    Q+S S+   N     + Q+N   G+   NS   +TPENN   ++ PK
Sbjct: 292 LLSVRKNFQQSSDSYLKSNKS---FDQLNNLVGLSTGNSEN-FTPENNSFSWTHPK 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,950
Number of Sequences: 5004
Number of extensions: 41792
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)