Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0017
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82093-7|CAB05021.1|  226|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z71258-5|CAA95784.2|  452|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z70034-14|CAC44294.1|  356|Caenorhabditis elegans Hypothetical p...    26   9.5  
Z70034-13|CAC44293.1|  350|Caenorhabditis elegans Hypothetical p...    26   9.5  
Z49910-11|CAC44292.1|  356|Caenorhabditis elegans Hypothetical p...    26   9.5  
Z49910-10|CAC44291.1|  350|Caenorhabditis elegans Hypothetical p...    26   9.5  
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    26   9.5  
AL009246-5|CAA15839.1|  357|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z82093-7|CAB05021.1|  226|Caenorhabditis elegans Hypothetical
           protein ZK39.8 protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 320 CKCYSSLHWDRGSCTGTVGV 261
           C   +S HW  GS TGT G+
Sbjct: 140 CNSMNSFHWTDGSTTGTDGL 159


>Z71258-5|CAA95784.2|  452|Caenorhabditis elegans Hypothetical
           protein C01H6.6 protein.
          Length = 452

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 3   TNKKRSTISSFLETEDKERRPRPVFMIPILKCC 101
           TN K   I+  LE  + + + R  FM+P+L  C
Sbjct: 74  TNPKSVDIARMLEIPEGKDKTRVYFMMPLLVLC 106


>Z70034-14|CAC44294.1|  356|Caenorhabditis elegans Hypothetical
           protein C18E9.11b protein.
          Length = 356

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 236 GLMWILVDKLPRFLYKTLDPNEVNYSIYSISA 331
           G  W L D+L  +LY+     +VN++ +++ A
Sbjct: 40  GAFWGLKDRLKCYLYECCHEPDVNFNYHTLDA 71


>Z70034-13|CAC44293.1|  350|Caenorhabditis elegans Hypothetical
           protein C18E9.11a protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 236 GLMWILVDKLPRFLYKTLDPNEVNYSIYSISA 331
           G  W L D+L  +LY+     +VN++ +++ A
Sbjct: 34  GAFWGLKDRLKCYLYECCHEPDVNFNYHTLDA 65


>Z49910-11|CAC44292.1|  356|Caenorhabditis elegans Hypothetical
           protein C18E9.11b protein.
          Length = 356

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 236 GLMWILVDKLPRFLYKTLDPNEVNYSIYSISA 331
           G  W L D+L  +LY+     +VN++ +++ A
Sbjct: 40  GAFWGLKDRLKCYLYECCHEPDVNFNYHTLDA 71


>Z49910-10|CAC44291.1|  350|Caenorhabditis elegans Hypothetical
           protein C18E9.11a protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 236 GLMWILVDKLPRFLYKTLDPNEVNYSIYSISA 331
           G  W L D+L  +LY+     +VN++ +++ A
Sbjct: 34  GAFWGLKDRLKCYLYECCHEPDVNFNYHTLDA 65


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 317 KCYSSLHWDRGSCTGTV 267
           KCY +  WD G  TG +
Sbjct: 202 KCYHAQQWDNGKTTGAI 218


>AL009246-5|CAA15839.1|  357|Caenorhabditis elegans Hypothetical
           protein C47F8.6 protein.
          Length = 357

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +2

Query: 191 PKLYEFPNDLKIDD 232
           PKLY+FP+D+K +D
Sbjct: 303 PKLYKFPHDIKKND 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,513,528
Number of Sequences: 27780
Number of extensions: 236671
Number of successful extensions: 629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)