Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0015
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   3.2  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    25   7.5  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   9.9  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   9.9  

>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 441 WKEGHSRSCSCWC-DQITTLTGLP 509
           +K G S SC CW  D ++ +TG P
Sbjct: 293 YKHGFSVSCCCWLPDGLSFITGSP 316


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -1

Query: 311 TLSLLYLWQGQNPLFNIAIFNI 246
           + ++LY+W  ++PL+ I+I  +
Sbjct: 101 SFTMLYIWSWKHPLYRISILGL 122


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 326 WSLVITLSLLYLWQGQNPLFNI 261
           WSL +  S LY+  G  P+ N+
Sbjct: 491 WSLRVLASFLYIQSGITPIINL 512


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 142 FVNYILLLIVLFGYNILLDI 83
           F+ Y+L  +VLFG ++LL +
Sbjct: 3   FILYVLASLVLFGLSVLLSL 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,474
Number of Sequences: 5004
Number of extensions: 46780
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)