Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0015
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_6965| Best HMM Match : EB (HMM E-Value=1.3) 30 2.0
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_52987| Best HMM Match : RBM1CTR (HMM E-Value=7) 29 3.4
SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 29 3.4
SB_23695| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_11707| Best HMM Match : rve (HMM E-Value=0.00025) 29 3.4
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_1289| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3) 29 3.4
SB_59606| Best HMM Match : rve (HMM E-Value=0.00032) 29 3.4
SB_58483| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3) 29 3.4
SB_48400| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69) 29 3.4
SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59) 29 3.4
SB_15193| Best HMM Match : rve (HMM E-Value=0.00021) 29 3.4
SB_14783| Best HMM Match : rve (HMM E-Value=0.00014) 29 3.4
SB_9972| Best HMM Match : rve (HMM E-Value=0.16) 29 3.4
>SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV +++G+ N+ K+I
Sbjct: 1086 DRNKTRGRDRYLVVDTEEGFCNIRKFI 1112
>SB_6965| Best HMM Match : EB (HMM E-Value=1.3)
Length = 514
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 399 RHGISVPLCFVWARWKEGHSRSCSCWCDQITTLTGLP 509
RH +SV +C RW G R C Q+ T LP
Sbjct: 180 RHNLSVAICQCSVRWLCGFKRVCRFVSRQVPTSDNLP 216
>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1505
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 1356 DRNKTRGRDRYLVVDTEGGFCNIRKFI 1382
>SB_52987| Best HMM Match : RBM1CTR (HMM E-Value=7)
Length = 247
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 98 DRNKTRGRDRYLVVDTEGGFCNIRKFI 124
>SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1236
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 1091 DRNKTRGRDRYLVVDTEGGFCNIRKFI 1117
>SB_23695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 373
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 224 DSNKTRGRDRYLVVDTEGGFCNIRKFI 250
>SB_11707| Best HMM Match : rve (HMM E-Value=0.00025)
Length = 353
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 254 DRNKTRGRDRYLVVDTEGGFCNIRKFI 280
>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1586
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 1437 DRNKTRGRDRYLVVDTEGGFCNIRKFI 1463
>SB_1289| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)
Length = 405
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 256 DRNKTRGRDRYLVVDTEGGFCNIRKFI 282
>SB_59606| Best HMM Match : rve (HMM E-Value=0.00032)
Length = 404
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 255 DRNKTRGRDRYLVVDTEGGFCNIRKFI 281
>SB_58483| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)
Length = 134
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 98 DRNKTRGRDRYLVVDTEGGFCNIRKFI 124
>SB_48400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 13 DRNKTRGRDRYLVVDTEGGFCNIRKFI 39
>SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69)
Length = 756
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 607 DRNKTRGRDRYLVVDTEGGFCNIRKFI 633
>SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59)
Length = 810
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 661 DRNKTRGRDRYLVVDTEGGFCNIRKFI 687
>SB_15193| Best HMM Match : rve (HMM E-Value=0.00021)
Length = 544
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 508 DRNKTRGRDRYLVVDTEGGFCNIRKFI 534
>SB_14783| Best HMM Match : rve (HMM E-Value=0.00014)
Length = 496
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 397 DRNKTRGRDRYLVVDTEGGFCNIRKFI 423
>SB_9972| Best HMM Match : rve (HMM E-Value=0.16)
Length = 514
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 20 DEEVTNKRDRYCVVGSKDGYSNV*KYI 100
D T RDRY VV ++ G+ N+ K+I
Sbjct: 365 DRNKTRGRDRYLVVDTEGGFCNIRKFI 391
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,305,122
Number of Sequences: 59808
Number of extensions: 344421
Number of successful extensions: 867
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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