Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0015
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44180.1 68414.m05103 aminoacylase, putative / N-acyl-L-amino...    29   3.7  
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ...    28   6.5  
At5g46795.1 68418.m05765 expressed protein                             27   8.5  
At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) simil...    27   8.5  

>At1g44180.1 68414.m05103 aminoacylase, putative /
           N-acyl-L-amino-acid amidohydrolase, putative similar to
           aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase,
           ACY-1) [Homo sapiens] SWISS-PROT:Q03154
          Length = 435

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 614 VAFFITEGRILELTLASRELFPPRPVLNFTWGG 516
           ++F + + R + LT  + E  P +PVL  TW G
Sbjct: 54  ISFLLDQARSIGLTSRTIEFVPGKPVLLLTWLG 86


>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
           protein low similarity to poly(A) binding protein II
           from [Xenopus laevis] GI:11527140, [Mus musculus]
           GI:2351846, [Bos taurus] GI:1051125; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) domain
          Length = 537

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 285 LPKVKQAKSDHERPRLLTNDGLNYHIYHE 371
           +P+ KQA+ D E+P LL++      I+ E
Sbjct: 368 VPQYKQAEQDFEKPSLLSHQSTKQDIFSE 396


>At5g46795.1 68418.m05765 expressed protein
          Length = 192

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -3

Query: 486 SGHTSSYMIGCGLLSTLPIQSTREQKFHV 400
           SG TSS  I   L  TLPI S+    FHV
Sbjct: 97  SGETSSQRIKRDLTKTLPIFSSNINPFHV 125


>At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) similar
           to malonyl CoA synthetase GB:AAF28840 from
           [Bradyrhizobium japonicum]; contains Pfam AMP-binding
           enzyme domain PF00501; identical to cDNA acyl-activating
           enzyme 13 (At3g16170) GI:29893232, acyl-activating
           enzyme 13 [Arabidopsis thaliana] GI:29893233
          Length = 544

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 429 VWARWKEGHSRSCSCWCDQITTLTGLP 509
           +W RW+E +  +     D IT  TG+P
Sbjct: 251 IWRRWRESYPVNDEKTNDSITVFTGVP 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,738,172
Number of Sequences: 28952
Number of extensions: 244698
Number of successful extensions: 541
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)