Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0014
         (486 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   0.64 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    24   0.64 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   1.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   2.6  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 243 GNGRNWSSCFRTKKPGHMH*RNDF 314
           GN ++W+  F+ K  G+   R DF
Sbjct: 190 GNAKHWTGIFQKKWRGYEDFRRDF 213


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -2

Query: 452 YVPRRLQFQMSQDVLRQNEVLSQISAIFYL 363
           +VPRR+ F + ++  R+N +   +  +F +
Sbjct: 331 FVPRRVPFDLFENKKRKNNIKLYVRRVFIM 360


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -1

Query: 453 IRPSSSTVPNVTGRPSSKRGIVTNIRDFLPDLC 355
           + P    V  VT +PSS +      RD    LC
Sbjct: 390 VEPVPQPVEEVTQKPSSTKAPAPPSRDLTTTLC 422


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/46 (21%), Positives = 20/46 (43%)
 Frame = -2

Query: 281 LRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTIEKIARFRTTFP 144
           ++S+   P P I SP    +S     ++ PN+  +  + +     P
Sbjct: 412 MQSQIINPQPQITSPSNTNTSTSSTNSNKPNSSDLNMLIKETMPLP 457


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,696
Number of Sequences: 336
Number of extensions: 2692
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)