Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0014
(486 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 30 0.21
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 30 0.21
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 29 0.49
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 28 0.65
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 0.65
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 28 0.86
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 1.1
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 1.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 1.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 1.5
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 2.6
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 6.1
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 25 6.1
SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|c... 25 6.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.0
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 25 8.0
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 29.9 bits (64), Expect = 0.21
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -3
Query: 484 FVPRIIRIGNDTSLVVYSSKCHRTSFVKTRYCHKYPRFFT*PMLHIDINRHRGPRY 317
FV ++ G + V S+K HRT ++ Y H P++ H ++ H P +
Sbjct: 57 FVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAF 112
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 29.9 bits (64), Expect = 0.21
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -3
Query: 484 FVPRIIRIGNDTSLVVYSSKCHRTSFVKTRYCHKYPRFFT*PMLHIDINRHRGPRY 317
FV ++ G + V S+K HRT ++ Y H P++ H ++ H P +
Sbjct: 57 FVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAF 112
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 28.7 bits (61), Expect = 0.49
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -1
Query: 363 DLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFA 217
D C S G E P N F N+Y R S + SS C T L F+
Sbjct: 85 DYLCKKVSKGPESPRV-NSFHNSYSRNQSPISRKSSCVTCSTVLPLEFS 132
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 28.3 bits (60), Expect = 0.65
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = -2
Query: 419 QDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVPPIAS 240
++ +RQNE + A + H + T+ R+ H TGL +T T PI
Sbjct: 60 EEKIRQNEQANTKFAFLHANDPYHPYYQHKLTEAREGKLKSHATGLSTQKTSTLARPIQK 119
Query: 239 P 237
P
Sbjct: 120 P 120
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 28.3 bits (60), Expect = 0.65
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 268 HELQFRPLPHHAEIILRSETGPTARQT 188
H Q PLP+H + ET PT QT
Sbjct: 622 HNKQTNPLPYHIVYMFSFETSPTVFQT 648
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 27.9 bits (59), Expect = 0.86
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -1
Query: 396 GIVTNIRDFLPDLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLF 223
G T ++ L + C +SIG T + +N+Y F TN S + +T R F
Sbjct: 521 GSYTQTKEILAKITCFCSSIGLTVSPTKTKITNSYTDKILFLGTNISHSKNVTFSRHF 578
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 176 LLSYCLACCWPGLGAKNNLRV-VRQWAELEFVFPN 277
LLS ACC G + N+++ V + E+ V+PN
Sbjct: 618 LLSLWTACCVTDEGKEKNIKIAVEIFREISIVYPN 652
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.5 bits (58), Expect = 1.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 3 RTPVSIINIFICTYINSINSFTSLSTLR*GTVN*QLNKILSCWMLLNWK 149
RT V I +C Y+ +N+F SL ++ + ++++ W LN K
Sbjct: 730 RTNVLAYFIQVCDYLRELNNFASLFSIISALNSSPIHRLRKTWANLNSK 778
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 260 PVPPIASPRGD-YSSLRDRANSTPNNMTIEK 171
P PP + D Y +L D A +PN MTI+K
Sbjct: 1099 PPPPAEVEKKDLYLALYDFAGRSPNEMTIKK 1129
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 168 RSIPYDISSLKASNS*GSYLIVNLQF 91
RS P D+SS S + GS+L NL F
Sbjct: 478 RSSPRDLSSFSTSVNDGSFLFKNLMF 503
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 311 IVSLMHMTGLLRSETRTPVPPIASPRGDYSSLRDRANST 195
+ S++ +T L+S T +P PP++SP S N +
Sbjct: 317 VSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNES 355
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.0 bits (52), Expect = 6.1
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = -1
Query: 306 FSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQYDNRKNRSIPYDISSLKASN 127
+SN D+ +S + ++S + ++ LF R HA + ++ + D SLK N
Sbjct: 974 YSNPDDKNTSTSDEDTSESEEESSNGLFSLAREANSHASKSLPQRRQIQFLDFDSLKTKN 1033
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 25.0 bits (52), Expect = 6.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 111 NKILSCWMLLNWKCRTESSD 170
++IL W LL W C E+ +
Sbjct: 237 DQILDIWYLLGWNCYVEAQN 256
>SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 133
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 27 IFICTYINSINSFTSLSTLR 86
IF+C + S N FT L + R
Sbjct: 86 IFVCNILESCNEFTDLGSAR 105
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 8.0
Identities = 23/86 (26%), Positives = 34/86 (39%)
Frame = -1
Query: 447 PSSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCTSTSIGTEDPGT*NRFSNAYDRASSFGN 268
PS+ T +T SS I N + + T I T + + S++Y ASS
Sbjct: 699 PSTFTTSFITS--SSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTST 756
Query: 267 TNSSSAHCLTTRRLFFAPRPGQQHAK 190
T SS + ++ F P AK
Sbjct: 757 TTSSVSSRQSSSSSSFTPSSAISTAK 782
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 24.6 bits (51), Expect = 8.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 327 PRCRLMSMCNIGQVKNRGYL*QYLVLT 407
P C + CN Q +G+L +++V T
Sbjct: 292 PVCEIALSCNYDQTSFKGFLTRFMVYT 318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,016
Number of Sequences: 5004
Number of extensions: 43837
Number of successful extensions: 127
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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