Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0014
(486 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0719 + 20388246-20390756,20391159-20391263 31 0.37
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 29 1.5
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91... 29 2.6
01_01_0051 + 389051-389623 28 3.5
11_06_0147 - 20626854-20627181,20627267-20627377,20627461-206278... 27 6.0
05_06_0180 + 26173452-26173692,26174456-26174698,26174796-261750... 27 6.0
03_06_0118 + 31795050-31796404,31796513-31797083 27 6.0
03_05_0964 - 29254947-29256183,29256275-29256381 27 6.0
06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813... 27 8.0
06_01_0518 + 3750996-3751424 27 8.0
03_05_0758 + 27491778-27492088,27492996-27493113 27 8.0
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 27 8.0
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 27 8.0
>08_02_0719 + 20388246-20390756,20391159-20391263
Length = 871
Score = 31.5 bits (68), Expect = 0.37
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = -2
Query: 443 RRLQFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETR 264
RR+ Q+ +D RQN LS++ +F + H + T K++S M G L E
Sbjct: 525 RRMSIQIEEDDFRQNVSLSKLQTLFISNKIPHVPKLLSSTTALKVLS---MQGSLIEEFP 581
Query: 263 TPVPPIASPRGDYSSLRD 210
+ + R Y +LRD
Sbjct: 582 KEIGNLTHLR--YLNLRD 597
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 3 RTPVSIINIFICTYINSINSFTSLSTLR*GTVN*QLNK 116
R + I N+F C + N ++ FTS L TV ++ K
Sbjct: 493 REHIPITNLFTCLWFNEVDRFTSRDQLSFSTVRDKIRK 530
>05_01_0135 +
908803-909059,913133-913187,913499-914047,914140-914365,
914446-914906
Length = 515
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 105 QLNKILSCWMLLNWKCRTESSDFFYCHIVWRAVGPVSER 221
Q+ +++C L NW ++ Y H W V P S R
Sbjct: 441 QVKTVIACCTLHNWILDNGDDEYVYDHETWYRVLPRSNR 479
>01_01_0051 + 389051-389623
Length = 190
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/79 (27%), Positives = 39/79 (49%)
Frame = -1
Query: 351 TSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQYDNRK 172
+S+S + + + S++ +SS +++SSS L RR P P Q+ K+
Sbjct: 101 SSSSESSSSSSSSSSESSSSSSSSSSESSSSSSDDDLARRRQQRNPSPPPQYKKEARRSP 160
Query: 171 NRSIPYDISSLKASNS*GS 115
+ S P S+ +S+S GS
Sbjct: 161 SPSPPSSSSTSSSSSSSGS 179
>11_06_0147 -
20626854-20627181,20627267-20627377,20627461-20627846,
20627949-20628057,20629375-20629421,20629506-20629646
Length = 373
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 303 SNAYDRASSFGNTNSSSAHCLTT 235
+N A+S GNT++SSA C+TT
Sbjct: 347 NNPTTAATSSGNTSASSAPCVTT 369
>05_06_0180 +
26173452-26173692,26174456-26174698,26174796-26175009,
26175115-26175194,26175381-26175502,26175950-26176053,
26176457-26176644,26176725-26176924,26177104-26177331
Length = 539
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 3 RTPVSIINIFICTYINSINSFTSLSTLR*GTVN*QLNKILSCWM 134
R + I N+F C + N ++ FTS + TV ++ + WM
Sbjct: 407 REHIPITNLFTCLWFNEVDRFTSRDQISFSTVRDKIRARVG-WM 449
>03_06_0118 + 31795050-31796404,31796513-31797083
Length = 641
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 122 QLLDAFKLEMSYGI-ERFFLLSYCLACCWPGLGAKNNLRVVRQWAELEFVFP 274
+++DA +L +Y I E +L L C P GA+ ++R V Q+ E + FP
Sbjct: 544 KVIDA-RLHGNYNIDEAILVLKLGLLCSHPLPGARPSMRQVVQYLEGDMPFP 594
>03_05_0964 - 29254947-29256183,29256275-29256381
Length = 447
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 242 RQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDV 346
R+W +FP+E+ +S+ + F GS+ +D+
Sbjct: 174 RRWGTRRPIFPSEKPKSFTAHQTFSFQGSAYWVDL 208
>06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,
8135179-8135256,8135442-8135697,8136427-8136515,
8137229-8137376,8137460-8137899,8138048-8138562,
8138791-8139061,8139231-8139492,8139583-8139938
Length = 1004
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 350 HRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVPPIASPRG-DYSSLRDRANSTPNN 186
H + P+ + +I + + R ET + VPP +PR R RA +P++
Sbjct: 872 HPEEELPQDEAEEIFKKLGLDAGFRLETNSVVPPTPAPRSVRPPPSRRRARRSPSS 927
>06_01_0518 + 3750996-3751424
Length = 142
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 309 RFSNAYDRASSFGNTNSSSAHCLTTRRL 226
R SNAY+ +S N+ + HC R L
Sbjct: 17 RVSNAYNSGASSSNSTGDTKHCRIMREL 44
>03_05_0758 + 27491778-27492088,27492996-27493113
Length = 142
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 299 MHMTGLLRSETRTPVPPIASPRGD 228
+H+ G S + P P +A+PRGD
Sbjct: 36 VHLAGGTASSSSAPGPAVATPRGD 59
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 27.1 bits (57), Expect = 8.0
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 266 VFPNEEARSYALEKRFYVPGSSVPIDVDVQHR-SGKKSRIFVTIPRFDEGRPVTFGTVDD 442
V E R++ +EK P +P V HR S KK + GR TVD
Sbjct: 310 VIEKEPNRNFVVEKGRGTPLKDIP---SVAHRISRKKPADLKFLHNVLFGRKGK--TVDF 364
Query: 443 EGRIVAYPDYSWHE 484
+G I+ + + WHE
Sbjct: 365 KGHILQFSGFVWHE 378
>03_03_0186 +
15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 327 PRCRLMSMCNIGQVKNRGYL*QYLVLTKDV 416
P+ R S+CNIG + R L + L++ DV
Sbjct: 400 PKLRDFSLCNIGSIHKRADLAKKLLVLTDV 429
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,982,509
Number of Sequences: 37544
Number of extensions: 278674
Number of successful extensions: 762
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -