Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0014
(486 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23390.1 68417.m03372 expressed protein contains Pfam profi... 29 1.3
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai... 29 1.3
At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ b... 28 2.9
At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4... 28 3.8
At2g21490.1 68415.m02557 dehydrin family protein contains Pfam d... 27 5.1
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 27 6.7
At2g38590.1 68415.m04740 F-box family protein contains Pfam prof... 27 6.7
At1g69890.1 68414.m08043 expressed protein contains Pfam profil... 27 6.7
At1g28240.1 68414.m03466 expressed protein 27 6.7
At5g26680.1 68418.m03171 endonuclease, putative similar to Swiss... 27 8.9
At3g47660.1 68416.m05188 regulator of chromosome condensation (R... 27 8.9
At1g80220.1 68414.m09388 hypothetical protein 27 8.9
At1g78740.1 68414.m09177 hypothetical protein 27 8.9
At1g53040.2 68414.m06006 expressed protein contains Pfam profile... 27 8.9
At1g53040.1 68414.m06005 expressed protein contains Pfam profile... 27 8.9
>At4g23390.1 68417.m03372 expressed protein contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 401
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 186 IVWRAVGPVSERRIISAW*GNGRNWSSCFRTKKPGHMH 299
IV+ + ++ + + W +G N + C+ T +PG +H
Sbjct: 208 IVYPGLNQNNQSHLFTYWTADGNNKTHCYNTLRPGFVH 245
>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region
Length = 653
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -1
Query: 453 IRPSSSTVPNVTGRPSSKRG-----IVTNIRDFLPDLCCTSTS 340
+R SSS P+ +G PS+K +V NI P CC S S
Sbjct: 375 LRVSSSQFPDTSGLPSNKSAFASWQVVCNITQPTPPKCCVSFS 417
>At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ
boundaries domain protein 18 (LBD18) identical to LOB
DOMAIN 18 [Arabidopsis thaliana] GI:17227164; supported
by full-length cDNA gi:17227163
Length = 262
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 333 TEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPR 211
T+ P + + + YD AS F T SSSA T +R F PR
Sbjct: 170 TDLPASVSPLPSTYDLASIFDQTTSSSAWA-TQQRRFIDPR 209
>At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4) /
HD-ZIP protein 4 identical to Homeobox-leucine zipper
protein ATHB-4 (HD-ZIP protein ATHB-4) (SP:P92953)
[Arabidopsis thaliana]
Length = 318
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 456 TIRPSSSTVPNVTGRPSSKR 397
T PS++T P V GRPS +R
Sbjct: 284 TAAPSTTTTPTVVGRPSPQR 303
>At2g21490.1 68415.m02557 dehydrin family protein contains Pfam
domain, PF00257: Dehydrin
Length = 185
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 444 SSSTVPNVTGRPSSKRGIVTNIRDFLP 364
+++T P T +P K+GI+ I+D LP
Sbjct: 151 ATTTGPATTDQPHEKKGILEKIKDKLP 177
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 243 GNGRNWSSCFRTKKPGHM 296
G GR S C++ +PGHM
Sbjct: 123 GGGRGGSDCYKCGEPGHM 140
>At2g38590.1 68415.m04740 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 424
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -3
Query: 457 NDTSLVVYSSKCHRTSFVKTRYCHK 383
+DT +VV++ C +T +++ RY H+
Sbjct: 127 DDTRVVVWNPYCGQTRWIQLRYSHR 151
>At1g69890.1 68414.m08043 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 279
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 350 VQHRSGKKSRIFVTIPR-FDEGRPVTFGTVDDEGRI 454
V S +KS +T+P EGRP+ + D+EG +
Sbjct: 176 VSRTSSEKSEEELTVPPPKSEGRPIYYHIADEEGHV 211
>At1g28240.1 68414.m03466 expressed protein
Length = 581
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 3 RTPVSIINIFICTYINSINSFTSLSTLR*GTV 98
R V I N+F C + N ++ FTS + TV
Sbjct: 448 REHVPISNLFTCLWFNEVDRFTSRDQISFSTV 479
>At5g26680.1 68418.m03171 endonuclease, putative similar to
Swiss-Prot:P39748 FLAP endonuclease-1 (Maturation factor
1) (MF1) [Homo sapiens]
Length = 453
Score = 26.6 bits (56), Expect = 8.9
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 122 QLLDAFKLEMSYGIERFFLLSYCLAC-CWPGLGAKNNLRVVRQWAELEFVFPNEEARSYA 298
++L+ +L M I+ +LS C C G+G + L+++RQ +E + N Y
Sbjct: 212 KILEELQLTMDQFID-LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQ 270
Query: 299 LEKRF 313
+ + +
Sbjct: 271 IPEEW 275
>At3g47660.1 68416.m05188 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1)
Length = 951
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 264 NSSSAHCLTTRRLFFAPRPGQQHAKQYDNRKN-RSIPYDIS 145
N+SSA L +R AP G+Q + +++ N RS+ D S
Sbjct: 121 NNSSALVLHSRSRSLAPENGEQSSSSQNSKSNIRSVSSDTS 161
>At1g80220.1 68414.m09388 hypothetical protein
Length = 255
Score = 26.6 bits (56), Expect = 8.9
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = -1
Query: 360 LCCTSTSIGTEDP--GT*NRFSNAYD---RASSFGNTNSSSAHCLTTRRLFFAPRPGQQH 196
L C+S+ G GT R SN + R + +N+ + HC R + +
Sbjct: 60 LTCSSSLNGCRPYMCGTSFRHSNCFKQFCRNNRKKRSNTKTLHCPLCRGEVLETKKASKT 119
Query: 195 AKQYDNRKNRSIPYD 151
A+++ N K RS P D
Sbjct: 120 ARRFMNAKPRSCPVD 134
>At1g78740.1 68414.m09177 hypothetical protein
Length = 306
Score = 26.6 bits (56), Expect = 8.9
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 218 AKNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSR 379
A+ +L +V LE++ ++ S + K PGS V +D+D+ SG SR
Sbjct: 190 AEKDLSIVIDAPRLEYLKLSDHQTSSFIIKN---PGSLVAVDIDINLSSGFDSR 240
>At1g53040.2 68414.m06006 expressed protein contains Pfam profile:
PF04765 protein of unknown function (DUF616)
Length = 540
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 3 RTPVSIINIFICTYINSINSFTSLSTL 83
R + I N+F C + N ++ FTS L
Sbjct: 422 REHIPITNLFTCVWFNEVDRFTSRDQL 448
>At1g53040.1 68414.m06005 expressed protein contains Pfam profile:
PF04765 protein of unknown function (DUF616)
Length = 540
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 3 RTPVSIINIFICTYINSINSFTSLSTL 83
R + I N+F C + N ++ FTS L
Sbjct: 422 REHIPITNLFTCVWFNEVDRFTSRDQL 448
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,550,116
Number of Sequences: 28952
Number of extensions: 224338
Number of successful extensions: 600
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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