Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0013
         (472 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    26   0.76 
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    24   2.3  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   7.1  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 199 GPSPSDYHESF*LDNFTKEKFTFVATYNYFKNTVKAGRYASPV 71
           G +P D+ ESF      +E  T V   +Y K T    RYA P+
Sbjct: 166 GENPPDHVESFERSGLREEVMTNVRKSSYTKPT-PIQRYAIPI 207


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 139 FTFVATYNYFK-NTVKAGRYASPVET*DNAPPSISPIGVKLEKKL 8
           +  +  Y+ F  N V  G   +PV+    APP ++    K++K L
Sbjct: 702 YMLLVIYSVFNMNDVSWGTRENPVDAAKKAPPPVAAPAGKMQKIL 746


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 166 RMTRGNQRDLARAKNQKKQVEMQKKKNASEKT-GLSLQER 282
           R  + +Q  L    N+K Q+E   KK  SEK   L  QE+
Sbjct: 408 REQKSDQDRLDSEINKKAQIEENYKKIESEKNEALKRQEK 447


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 371,681
Number of Sequences: 2352
Number of extensions: 6088
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41245467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)