Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0011
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.12 
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    29   0.63 
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   1.9  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    27   3.3  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    25   7.7  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 222 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 115
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 339 LNSLKLEIHNYLQSCFKLNASLEFNDKVY 253
           L  L LEI N+ Q+   L  +LE+ +KVY
Sbjct: 205 LGELSLEIENFSQASQDLKTALEWKEKVY 233


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = -1

Query: 324 LEIHNYLQSCFKLNASLEFNDKVYFPNDFACPMTAIAGPALINPSRTLRPTFSI 163
           L +H YL +C +  + +E    ++    +   +T+I  P +++PS+ +    S+
Sbjct: 130 LLLHLYLLNCHEQGSLIEEPRPLFLDPSWKEKVTSIMSPQMVDPSKMISSCLSL 183


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 620 NFLNIHSNKTYNVKLKDEL 564
           NF++ H NK Y + L DEL
Sbjct: 233 NFMDKHLNKPYEINLMDEL 251


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -2

Query: 164 FS*RASTWXXXXXXXXXXXXXXXXRSSKYVQNSFYRNSIVPENSKFQYNIVRPS 3
           +S R +TW                    YVQNSFY+ +I+ E        V+P+
Sbjct: 243 YSYRCNTWFYLSKHMKKVASANMDAQCFYVQNSFYKITILYEIKFDDLGFVQPN 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,754
Number of Sequences: 5004
Number of extensions: 44042
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)