Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0011
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0149 - 8801675-8804332                                           30   2.0  
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698...    28   6.0  
02_05_0441 + 29040250-29040524,29040656-29040772,29040834-290411...    28   7.9  
02_03_0252 - 16882960-16884106,16884173-16884518,16892586-16892724     28   7.9  

>11_02_0149 - 8801675-8804332
          Length = 885

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/63 (23%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
 Frame = -2

Query: 608 IHSNKTYNVKLKDELYKNI*FICLRFIIYYHNILKLHYIASLK---YISAHVYLITLMKA 438
           ++S K+ + KL  E+ ++    CL  ++ +HN+ K+H +   K    ++ H++ +T +K 
Sbjct: 437 VYSTKSSSSKLLLEIKEDHHLECLDEMVAFHNLSKIHELEVSKSPPLMNKHLHWLTSLKT 496

Query: 437 MTV 429
           + +
Sbjct: 497 LKI 499


>07_03_1727 +
           29068348-29068571,29069473-29069514,29069593-29069839,
           29069936-29070013,29070551-29070736,29070829-29071126,
           29071775-29072244
          Length = 514

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 115 RRGQRCSRAQVEALQEN*ESGTQRSRWINQSGSSYSRHRA 234
           +RG++ +RA+ EA +E    GT+R+R + +  +    HRA
Sbjct: 384 KRGEQMARAR-EAAREITPEGTERARVVGEEEAGPEHHRA 422


>02_05_0441 +
           29040250-29040524,29040656-29040772,29040834-29041143,
           29041863-29042018,29042332-29042483,29042783-29042936,
           29043897-29043998,29044168-29044209
          Length = 435

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 219 IAGPALINPSRTLRPTFSIFLKSFHLGSGAALTA 118
           I GPA+++    L+P  S  L  F LGS   L +
Sbjct: 304 ILGPAMVSLYMPLQPVVSALLSKFFLGSSVYLAS 337


>02_03_0252 - 16882960-16884106,16884173-16884518,16892586-16892724
          Length = 543

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 185 VRDGLIKAG-PAIAVIGQAKSLGK*TLSLNSKDAFSLKH 298
           VR  ++KA  P I V+G   SL    LSL+SKD   L+H
Sbjct: 68  VRVTIVKAQHPWIVVVGSPMSLRPIDLSLSSKDRDILEH 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,115,151
Number of Sequences: 37544
Number of extensions: 237261
Number of successful extensions: 512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)