Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0011
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.3  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 626 NLNFLNIHSNKTYNVKLKDELYKNI*FI 543
           +L+   IH+N  YN     +LY NI +I
Sbjct: 306 SLSNKTIHNNNNYNNYNNKKLYYNINYI 333


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 635 KNENLNFLNIHSNKTYNVKLKDELYKN 555
           K  N N  N ++N  YN   K   YKN
Sbjct: 323 KYSNYNNYNNYNNNNYNNYNKKLYYKN 349


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 211 TRFD*SIANVASHFLNFLEELPPGLGSSADRAESQHQREDE 89
           TR   S+A  A   L     + PG+    + A   ++ EDE
Sbjct: 400 TRSGYSVARFAETALGAAALVAPGMEEPTNTASGSNEDEDE 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,846
Number of Sequences: 438
Number of extensions: 3385
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)