Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0010
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 97 2e-21
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 84 2e-17
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 82 7e-17
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 81 2e-16
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 64 2e-11
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 28 1.6
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 3.7
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 26 6.5
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 25 8.6
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 97.1 bits (231), Expect = 2e-21
Identities = 52/137 (37%), Positives = 77/137 (56%)
Frame = -3
Query: 628 VNEERLLEIKVEVGAPDGHKSRLRGEGEPHVDGEPGDLIVILKTERHPQFTRKADDLYTN 449
V +R+LEIKV+ G G K + GEG+ DG D+ +L + HP FTR DDL
Sbjct: 240 VKADRILEIKVKPGWKAGTKIKFAGEGDEKPDGTVQDIQFVLAEKPHPVFTRSGDDLRMQ 299
Query: 448 VTISLQDALTGFTLELEHLDGHKVSVSRDKVTWAGARVRKKGEGMPNFENNNLHGNLYVT 269
V +SL++AL GF+ ++ +DG K+ VS T G + G GMP +N + GN+ +
Sbjct: 300 VELSLKEALLGFSKQISTIDGKKLKVSSSLPTQPGYEITYPGFGMPLPKNPSQRGNMIIE 359
Query: 268 FDIEFPKQDFTDAEKEA 218
++FP + T A+K A
Sbjct: 360 CKVKFP-TELTPAQKTA 375
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 84.2 bits (199), Expect = 2e-17
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Frame = -3
Query: 655 CDECPNVKFVNEERLLEIKVEVGAPDGHKSRLRGEGEPHVDGEPGDLIVILKTERHPQFT 476
C EC K +++ ++L + VE G +G K + EGE PGD+I ++ + HP+F
Sbjct: 195 CKECDGAKVISQRKILTVHVEKGMHNGQKIVFKEEGEQAPGIIPGDVIFVIDQKEHPRFK 254
Query: 475 RKADDLYTNVTISLQDALTGFTLELEHLDGHKVSVSRDKVTWAGARVRK--KGEGMPNFE 302
R D L+ + L AL G + +EHLD +++ K G+GM + +
Sbjct: 255 RSGDHLFYEAHVDLLTALAGGQIVVEHLDDRWLTIPIIPGECIRPNELKVLPGQGMLS-Q 313
Query: 301 NNNLHGNLYVTFDIEFPKQDFTDAEKEAL 215
++ GNLY+ F ++FP+ +F E+ AL
Sbjct: 314 RHHQPGNLYIRFHVDFPEPNFATPEQLAL 342
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 82.2 bits (194), Expect = 7e-17
Identities = 58/159 (36%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Frame = -3
Query: 655 CDECPNVKFVNEERLLEIKVEVGAPDGHKSRLRGEGEPHVDGEPGDLIVILKTERHPQFT 476
C C V E+R+L V A + K RG + PGD+I+ L + HP F
Sbjct: 207 CKHCKGSGTVPEQRMLSFFVNRSAKENDKIIQRGMADEAYGITPGDVILQLHQKPHPVFE 266
Query: 475 RKADDLYTNVTISLQDALTGFT-LELEHLDGHKVSVSR--DKVTWAGARVRKKGEGMPNF 305
R DDL + ISL +ALTGF + L LDG + + K+ G + GEGM
Sbjct: 267 RLGDDLKAKLKISLAEALTGFNRVILTTLDGRGLEYVQPIGKILHPGDCLIIPGEGMYKD 326
Query: 304 ENNNLHGNLYVTFDIEFPKQDFT-DAEKEALRKILNQPP 191
+L G+LY+ DIEFPK E E LR IL P
Sbjct: 327 SKTDLRGDLYLEVDIEFPKDGLIGTTEIEILRDILPSIP 365
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 81.0 bits (191), Expect = 2e-16
Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 9/146 (6%)
Frame = -3
Query: 655 CDECPNVKFVNEERLLEIKVEVGAPDGHKSRLRGEGEPHVDGEPGDLIVILKTERHPQ-F 479
C C + +IKV GAP+G++ RG+ + E GD+IVIL+ +
Sbjct: 213 CPRCKGERVAEVVESFDIKVPAGAPEGYRIGFRGKADEIPGMEAGDIIVILEAAGGDYGW 272
Query: 478 TRKADDLYTNVTISLQDALTG-FTLELEHLDGHKVSVSRD--KVTWAGARVRKKGEGMPN 308
TRK +DLY TIS+++AL G + +++ LDG + V R +V G R K +GMP
Sbjct: 273 TRKDNDLYRKETISVREALLGNWKRKIQKLDGSFMEVKRSAGEVVHPGETERVKNQGMPI 332
Query: 307 F-----ENNNLHGNLYVTFDIEFPKQ 245
+ + + HG+ Y+ ++++FPK+
Sbjct: 333 YNLHKGKTTSAHGSAYIEWEVKFPKK 358
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 64.5 bits (150), Expect = 2e-11
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Frame = -3
Query: 661 TVCDECPNVKFVNEERLLEIKVEVGAPDGHKSRLRGEGE--------PHVDGEPGDLIVI 506
+ C C V E + + I + G D R+ G G P+ PGDL
Sbjct: 294 SACRSCMGSGTVRERKTVSIDIPPGIDDNTVLRVMGAGNDASTAKGGPNAKSRPGDLFAT 353
Query: 505 LKTERHPQFTRKADDLYTNVTISLQDALTGFTLELEHLDGHKVSVSRDKVTWAGARVRKK 326
+ +HP F R+ ++ N I + A G TL + L G+ V + T G R+
Sbjct: 354 IHVRKHPFFVREGTNVTYNAKIPMTTAALGGTLRVPTLTGN-VDLRVSPGTSTGDRITMA 412
Query: 325 GEGMPNFENNNLHGNLYVTFDIEFPK 248
G+G+ N + +GN YV F++ PK
Sbjct: 413 GKGIRKV-NTSRYGNFYVNFEVTIPK 437
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = -3
Query: 280 LYVTFDIEFPKQDFT----DAEKEALRKILNQPPNNKIYN 173
LY FDI +F+ D+E E L K++ PP ++Y+
Sbjct: 1820 LYCMFDISLEFNEFSNNEDDSELERLSKLIKVPPLQELYS 1859
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +1
Query: 268 KLHKDF--HGGCYFQNLACLLPSYELLHQPML 357
++H+DF H G +F+ L +L + ++LHQ L
Sbjct: 365 EVHEDFIFHEGNHFRQLKLILEANDILHQLFL 396
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 27 SFFFFFLQIKMVFLFFIKPSHARLHSGNKNLMKPHSVQL 143
SFF F Q K V + + H G+K+ MKPH + +
Sbjct: 17 SFFSFRPQKKRV-TYHLDEQVGNYHYGDKHPMKPHRITI 54
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -3
Query: 316 MPNFENNNLHGNLYVTFDIEFPKQDFTDAEKEALRK 209
MP ++ + N++ FDI++ + D +E R+
Sbjct: 460 MPELKDTEISENIFKKFDIDYATIPYRDQVREQARR 495
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,728
Number of Sequences: 5004
Number of extensions: 62043
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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