Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0010
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    27   0.25 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   0.99 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.0  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   3.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   4.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.2  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 36  FFFLQIKMVFLFFIKPSHARLHSGNKNLMKPH 131
           FFFL + ++  +F+ P+ +   +  ++++KPH
Sbjct: 9   FFFLSVILITSYFVTPTMSIKCNCKRHVIKPH 40


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 182 FIIWWLVQYFS 214
           F IWWL+ YFS
Sbjct: 3   FNIWWLILYFS 13


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 6/30 (20%), Positives = 19/30 (63%)
 Frame = +3

Query: 153 VYYHYSPLYILLFGGWFSIFRKASFSASVK 242
           ++ ++ PL+++++  WF I   A+   +++
Sbjct: 222 IWVYFVPLFLIIYSYWFIIQAVAAHEKNMR 251


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 33 FFFFLQIKMVFLFF 74
          FFF L I ++FL+F
Sbjct: 7  FFFILVITLIFLYF 20


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -3

Query: 301 NNNLHGNLYVTFDIEFPKQDFTDAEKEALRKIL 203
           N     NLY+ F +    +DF D   E   K +
Sbjct: 253 NKEARSNLYLPFHLTLSFRDFRDRTTEQQHKAM 285


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 6/30 (20%), Positives = 19/30 (63%)
 Frame = +3

Query: 153 VYYHYSPLYILLFGGWFSIFRKASFSASVK 242
           ++ ++ PL+++++  WF I   A+   +++
Sbjct: 98  IWVYFVPLFLIIYSYWFIIQAVAAHEKNMR 127


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -3

Query: 301 NNNLHGNLYVTFDIEFPKQDFTDAEKEALRKIL 203
           N     NLY+ F +    +DF D   E   K +
Sbjct: 248 NKEARSNLYLPFHLTLSFRDFRDRTTEQQHKAM 280


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 247 QDFTDAEKEALRKILNQPPNNKIYN 173
           +D T+ E+   RKI++   NN  YN
Sbjct: 301 RDRTERERSKERKIISSLSNNYNYN 325


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 688 PGRFQMMQQTVCDECPNVKFVNE 620
           PG    +++  C ECP  KF +E
Sbjct: 251 PGYQADVEKQECTECPIGKFKHE 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,044
Number of Sequences: 438
Number of extensions: 4207
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)