Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0009
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 140 2e-34
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 51 1e-07
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 33 0.030
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 28 1.1
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 28 1.1
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 28 1.1
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|... 27 3.4
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 4.5
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 26 6.0
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 6.0
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 6.0
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 7.9
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 140 bits (338), Expect = 2e-34
Identities = 65/157 (41%), Positives = 100/157 (63%), Gaps = 2/157 (1%)
Frame = +1
Query: 199 SASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADF 378
+ PI T ++V+ +KF G +IA D L SYGSLARF D R+ KV D ++G GGD +D+
Sbjct: 36 TVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDY 95
Query: 379 QYLKDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI--QDG 552
Q ++ ++++ I E GDG L+P +H +L++VLY +R+K+DP WN +VAG+ ++
Sbjct: 96 QQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENK 155
Query: 553 EPFLGAVDKLGTAYEDAVISNGLGAYMATPLLRDAVD 663
EP++ D GT Y I+ G ++A P+LR A D
Sbjct: 156 EPYVAFADLRGTTYSAPAIATGFAMHLALPMLRKATD 192
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 51.2 bits (117), Expect = 1e-07
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 1/147 (0%)
Frame = +1
Query: 226 TVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQ 405
T + + D ++AGDT G R PRV +V D +++G G AD L IQQ
Sbjct: 15 TTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQ 74
Query: 406 KIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI-QDGEPFLGAVDKL 582
+ ID ++ +S C + +LY KR P + VAGI ++G+ + + D +
Sbjct: 75 R-IDLYHDNHERKMSAQSCACMVRTLLYGKR--FFPYYVYTTVAGIDKEGKGEIYSFDPV 131
Query: 583 GTAYEDAVISNGLGAYMATPLLRDAVD 663
G+ + + G A TP L + V+
Sbjct: 132 GSYEREWCRAGGSAANFITPFLDNQVN 158
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 33.5 bits (73), Expect = 0.030
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 214 TTTTTVIGVKFDKGCVIAG-DTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 390
+T TT++GV K C++ G DT + G + ++C ++ ++ I G AD +++
Sbjct: 33 STGTTIVGV-IAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVT 91
Query: 391 DIIQQKI 411
+I I
Sbjct: 92 SMISSNI 98
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 88 PTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTA-HSASPITTT 222
P+PL P+P F N P AS P+ TA SASP+ +T
Sbjct: 364 PSPLQNTNPAPSTFPN-PSVASPAFPNSSTSNPSTAPASASPLAST 408
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 98 CGKTDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAPSRPPQLSSELSLTRD 256
CG+T L+H ++ E Q LHP V Q Q+ PPQ ++L + D
Sbjct: 49 CGETG--LKHSLVHFE---QTLHPIVVTIARQPKQKINDEPPQKITKLEIRED 96
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 127 FYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVI 234
+YN G +S + + HG+ DF +H + T T I
Sbjct: 254 YYNNDGASSWVFTADHGMSDFGSHGDGNLDNTRTPI 289
>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 373 DFQYLKDIIQQKIIDERCVGDGLQ--LKPRSLHCWLTRVLYNKRSKM 507
D +LKD+ QQKI + + +Q +KP C + R LY+K ++
Sbjct: 31 DADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCI-RQLYSKSDEL 76
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 256 CVIAGDTLGSYGSLARFRDCPRVMKVNDLILL 351
C AG +LG Y +L+ D + + DL+ L
Sbjct: 1822 CAFAGHSLGEYSALSAMGDVLSIEALVDLVFL 1853
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -1
Query: 700 QPQ*QFLGPEVLYPLRPSVEESPCKLL-ARSRSQHLHR-LFPIYQQLRERVHH 548
QP Q L P+VL +R V P K++ A S+ + R I +++R R+++
Sbjct: 192 QPIQQLLPPDVLASIRADVTREPAKVVSAGSKQITVERGELEIEREMRARIYN 244
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -1
Query: 637 SPCKLLARSRSQH---LHRLFPIYQQLRERVHHPEYRQ 533
SP ++L S + H L L P +++ +E H P +RQ
Sbjct: 55 SPLRILGISSNSHNVNLFHLSPEFKRFKEDYHSPWFRQ 92
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 646 VEESPCKLLARSRSQHLHRLFPIYQQ 569
+ E+ KLLA+S ++H+ LF YQ+
Sbjct: 583 LNENVAKLLAQSTNKHVATLFSDYQE 608
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -2
Query: 414 NDFLLNDILQILKISIVSSA 355
NDFL+ D+L ILK+S SS+
Sbjct: 14 NDFLIADMLLILKLSPRSSS 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,343
Number of Sequences: 5004
Number of extensions: 60581
Number of successful extensions: 182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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