Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0009
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) 94 1e-19
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45) 46 4e-05
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 34 0.096
SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2) 31 0.90
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 30 2.1
SB_43547| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_15911| Best HMM Match : Sec7 (HMM E-Value=0) 28 6.3
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17) 28 8.4
>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
Length = 938
Score = 93.9 bits (223), Expect = 1e-19
Identities = 38/68 (55%), Positives = 56/68 (82%)
Frame = +1
Query: 208 PITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYL 387
P TT T+V+G+KF+ G ++A DTLGSYGSLAR+R+ R+M+VN+ ++G GDYADFQY+
Sbjct: 871 PTTTGTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGDYADFQYI 930
Query: 388 KDIIQQKI 411
K +++QK+
Sbjct: 931 KSVLEQKV 938
>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
Length = 291
Score = 45.6 bits (103), Expect = 4e-05
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 10/168 (5%)
Frame = +1
Query: 226 TVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQ 405
TV+ + + VIA DT S G RD P+V K+ +LGC G + D L I
Sbjct: 89 TVLAISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGFHGDCLTLTKHISA 148
Query: 406 KI-IDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI-QDGEPFLGAVDK 579
++ + E G + ++ L+ +LY +R P + ++AG+ +G+ + + D
Sbjct: 149 RLQMYEH--DHGKAMSCTAIAQMLSTMLYYRR--FFPYYTYNILAGLDSEGKGCVFSFDP 204
Query: 580 LGTAYEDAVISNGLGAYMATPLL--------RDAVDKGPLDQETAIAV 699
+G+ + + G + + PLL ++ V PL ++ A+A+
Sbjct: 205 VGSYEREVYRAGGSASALLQPLLDNQIGFKNQEGVPHTPLTRDKAVAL 252
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 34.3 bits (75), Expect = 0.096
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1
Query: 661 PLRPSVEESPCKLLARSRSQHLHRLFPIYQQLRERVHHPEYRQPHSCSR 515
PL ++ ++ K AR + H H PIYQ + VHHP+ + C R
Sbjct: 392 PLHKTLFDALLKDAARDDNPHEHAAMPIYQN-KTNVHHPDSPEHEHCLR 439
>SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
Length = 958
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +1
Query: 91 TPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDK 252
TP W N A N P N++ P HG+ A++ P T + + D+
Sbjct: 468 TPAWANADQQQAQGNNPANSNADQPQDHGIYIVNANAGHPQAQEHTPVWMNADQ 521
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 91 TPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHSASP 210
TP W N A N P N++ P HG+ A++ P
Sbjct: 423 TPAWVNADQQQAQGNNPANSNADQPQDHGIYIVNANADHP 462
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/58 (27%), Positives = 21/58 (36%)
Frame = +1
Query: 79 TMNPTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDK 252
T P W N A N P N+ P HG+ A++ P T V D+
Sbjct: 374 TQEHMPAWANADQQQAQGNNPANSKADQPQDHGIYIVNANADHPQAQEHTPAWVNADQ 431
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 541 IQDGEPFLGAVDKLGTAYEDAVI-SNGLGAYMATPLLRDAVDKGPLDQETAI 693
+ DG + +D +EDA++ S GA + P LRD V + PL+ +
Sbjct: 139 LPDGRYVIVIIDYFTRYFEDALLRSTKTGAVIDLPFLRDLVTQKPLEMRNKL 190
>SB_43547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 104 KTDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAPSRPPQLSSELSLTRDVLSPVTH 277
+T+R L + ++++ + P VYRI + +R S QLS + LT S H
Sbjct: 163 RTERLLTGRLQTIDLVREFGSPTNVYRIADVVRRPFSEVLQLSGVIQLTEWEFSEACH 220
>SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)
Length = 1220
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -1
Query: 562 ERVHHPEYRQPHSCSRGDPSCSSCCRGHESTSSAENGA*AGDHLQHSAH 416
+ HPE PHS + + S SS H ST+ +N + H+ H
Sbjct: 457 QSAEHPEDHSPHSAASVENSSSSQHLEHNSTTHDDNQS-VSSHISDHDH 504
>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
Length = 297
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 471 VDSCPLQQEEQDGSPLEQLCGCRY 542
V PL ++ +DG+PL CG RY
Sbjct: 228 VAKTPLWRDAEDGTPLCNACGIRY 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,589,626
Number of Sequences: 59808
Number of extensions: 488184
Number of successful extensions: 2129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2128
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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